ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	RBP47B	RNA-binding protein 47B
ath-u.5	RBP47B	RNA-binding protein 47B
ath-r.7	RBP47B	RNA-binding protein 47B
ath-e.2	RBP47B	RNA-binding protein 47B
ath-m.4.bio	RBP47B	RNA-binding protein 47B
ath-m.4.hor	RBP47B	RNA-binding protein 47B
ath-m.4.lig	RBP47B	RNA-binding protein 47B
ath-m.4.str	RBP47B	RNA-binding protein 47B
ath-m.4.tis	RBP47B	RNA-binding protein 47B
ath-u.5	RBP47C'	RNA-binding protein 47C'
ath-u.5	ATRBP45C	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G19350	RNA-binding (RRM/RBD/RNP motifs) family protein
bra-r.6	103869491	polyadenylate-binding protein RBP47B
bra-r.6	103866749	polyadenylate-binding protein RBP45C
bra-r.6	103868789	polyadenylate-binding protein RBP47A
bna-r.1	106414484	polyadenylate-binding protein RBP45C-like
bna-r.1	125608524	polyadenylate-binding protein RBP47B-like
bna-r.1	125584144	polyadenylate-binding protein RBP47B'-like
ghi-r.1	107933435	polyadenylate-binding protein RBP45C
ghi-r.1	107935615	polyadenylate-binding protein RBP47B
ghi-r.1	107958098	polyadenylate-binding protein RBP47
cit-r.1	102622145	polyadenylate-binding protein RBP47-like
cit-r.1	102613416	polyadenylate-binding protein RBP45
cit-r.1	102613263	polyadenylate-binding protein RBP45C
gma-u.5	100801446	polyadenylate-binding protein RBP47C
gma-u.5	100801562	polyadenylate-binding protein RBP45
gma-u.5	100813616	polyadenylate-binding protein RBP47B'
vvi-u.5	100243203	polyadenylate-binding protein RBP47B'
vvi-u.5	100250363	polyadenylate-binding protein RBP45
ppo-u.5	18097813	polyadenylate-binding protein RBP47
ppo-u.5	18104937	polyadenylate-binding protein RBP47
ppo-u.5	7482317	polyadenylate-binding protein RBP47B'
mtr-u.5	25482078	polyadenylate-binding protein RBP47C
mtr-u.5	25486138	polyadenylate-binding protein RBP45
mtr-u.5	11446957	polyadenylate-binding protein RBP47
sly-u.5	101261707	polyadenylate-binding protein RBP47
sly-u.5	101257903	polyadenylate-binding protein RBP45-like
sly-u.5	101255948	polyadenylate-binding protein RBP45
sot-r.1	102577643	DNA-binding protein-like
sot-r.1	102583610	polyadenylate-binding protein RBP45
sot-r.1	102590727	polyadenylate-binding protein RBP45-like
nta-r.1	107826742	polyadenylate-binding protein RBP45-like
nta-r.1	107789104	polyadenylate-binding protein RBP45
nta-r.1	107798870	polyadenylate-binding protein RBP47C'-like
osa-u.5	9270800	RNA-binding protein L-like
osa-u.5	4333283	RNA-binding protein L-like
osa-u.5	4344847	RNA-binding protein L-like
zma-u.5	100274401	Polyadenylate-binding protein RBP45C
zma-u.5	100278143	uncharacterized LOC100278143
zma-u.5	100285821	uncharacterized LOC100285821
tae-r.2	123188425	polyadenylate-binding protein RBP45
tae-r.2	123189357	polyadenylate-binding protein RBP47
tae-r.2	123144572	polyadenylate-binding protein RBP47
hvu-r.1	123425891	RNA-binding protein L-like
hvu-r.1	123398803	polyadenylate-binding protein RBP47-like
hvu-r.1	123449576	polyadenylate-binding protein RBP47B'
sbi-r.1	8066818	polyadenylate-binding protein RBP45
sbi-r.1	8057438	polyadenylate-binding protein RBP47
sbi-r.1	8080123	polyadenylate-binding protein RBP45
bdi-r.1	100825555	polyadenylate-binding protein RBP47
bdi-r.1	100827124	polyadenylate-binding protein RBP45
bdi-r.1	100831361	polyadenylate-binding protein RBP47C'
cre-r.1	CHLRE_16g652900v5	uncharacterized protein

Top 50 coexpressed genes to RBP47B (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to RBP47B (ath-m.9 coexpression data)

CoexMap"821447"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0034063 [list] [network] stress granule assembly	(9 genes)	IEP
GO:0034605 [list] [network] cellular response to heat	(50 genes)	ISS

GO CC

GO:0010494 [list] [network] cytoplasmic stress granule	(143 genes)	IDA ISS
GO:0005829 [list] [network] cytosol	(2593 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM ISS

GO MF

GO:0008143 [list] [network] poly(A) binding	(12 genes)	ISS
GO:0003729 [list] [network] mRNA binding	(1514 genes)	HDA IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_188544.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_188544.1)

Subcellular
localization
TargetP

other 8

(predict for NP_188544.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for RBP47B	ath-u.5 for RBP47B	ath-r.7 for RBP47B	ath-e.2 for RBP47B	ath-m.4.bio for RBP47B	ath-m.4.hor for RBP47B	ath-m.4.lig for RBP47B	ath-m.4.str for RBP47B	ath-m.4.tis for RBP47B	ath-u.5 for RBP47C'	ath-u.5 for ATRBP45C	ath-u.5 for AT5G19350	bra-r.6 for 103869491	bra-r.6 for 103866749	bra-r.6 for 103868789	bna-r.1 for 106414484	bna-r.1 for 125608524	bna-r.1 for 125584144	ghi-r.1 for 107933435	ghi-r.1 for 107935615	ghi-r.1 for 107958098	cit-r.1 for 102622145	cit-r.1 for 102613416	cit-r.1 for 102613263	gma-u.5 for 100801446	gma-u.5 for 100801562	gma-u.5 for 100813616	vvi-u.5 for 100243203	vvi-u.5 for 100250363	ppo-u.5 for 18097813	ppo-u.5 for 18104937	ppo-u.5 for 7482317	mtr-u.5 for 25482078	mtr-u.5 for 25486138	mtr-u.5 for 11446957	sly-u.5 for 101261707	sly-u.5 for 101257903	sly-u.5 for 101255948	sot-r.1 for 102577643	sot-r.1 for 102583610	sot-r.1 for 102590727	nta-r.1 for 107826742	nta-r.1 for 107789104	nta-r.1 for 107798870	osa-u.5 for 9270800	osa-u.5 for 4333283	osa-u.5 for 4344847	zma-u.5 for 100274401	zma-u.5 for 100278143	zma-u.5 for 100285821	tae-r.2 for 123188425	tae-r.2 for 123189357	tae-r.2 for 123144572	hvu-r.1 for 123425891	hvu-r.1 for 123398803	hvu-r.1 for 123449576	sbi-r.1 for 8066818	sbi-r.1 for 8057438	sbi-r.1 for 8080123	bdi-r.1 for 100825555	bdi-r.1 for 100827124	bdi-r.1 for 100831361	cre-r.1 for CHLRE_16g652900v5

Ortholog

Ortholog ID: 192

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RBP45B

Function^*

RNA-binding (RRM/RBD/RNP motifs) family protein

polyadenylate-binding protein RBP47B

polyadenylate-binding protein RBP47C

polyadenylate-binding protein RBP47B

polyadenylate-binding protein RBP47B'-like

polyadenylate-binding protein RBP47A-like

polyadenylate-binding protein RBP45C-like

polyadenylate-binding protein RBP45C

polyadenylate-binding protein RBP47B

polyadenylate-binding protein RBP45C

polyadenylate-binding protein RBP47B

polyadenylate-binding protein RBP45

polyadenylate-binding protein RBP47B'

polyadenylate-binding protein RBP47C

polyadenylate-binding protein RBP47B'

polyadenylate-binding protein RBP47

polyadenylate-binding protein RBP45C

polyadenylate-binding protein RBP47C

polyadenylate-binding protein RBP45

polyadenylate-binding protein RBP47

polyadenylate-binding protein RBP45

polyadenylate-binding protein RBP45-like

polyadenylate-binding protein RBP47-like

polyadenylate-binding protein RBP45

RNA-binding protein L-like

polyadenylate-binding protein RBP47B'

polyadenylate-binding protein RBP47A

uncharacterized LOC100273450

polyadenylate-binding protein RBP47

polyadenylate-binding protein RBP45

polyadenylate-binding protein RBP47

RNA-binding protein L-like

polyadenylate-binding protein RBP47-like

polyadenylate-binding protein RBP45

polyadenylate-binding protein RBP47

polyadenylate-binding protein RBP45

polyadenylate-binding protein RBP47C'

polyadenylate-binding protein RBP45

polyadenylate-binding protein RBP47B'

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3
ath03040	Spliceosome	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	8
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3
bra00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	7
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00240	Pyrimidine metabolism	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	2
gma03410	Base excision repair	2
gma03420	Nucleotide excision repair	2
gma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4
vvi03040	Spliceosome	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	3
vvi03013	Nucleocytoplasmic transport	2
vvi03015	mRNA surveillance pathway	2
vvi03040	Spliceosome	2
vvi00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	4
mtr03015	mRNA surveillance pathway	2
mtr03040	Spliceosome	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03060	Protein export	2
sly04141	Protein processing in endoplasmic reticulum	2
sly04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	3
sly03015	mRNA surveillance pathway	3
sly03250	Viral life cycle - HIV-1	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01230	Biosynthesis of amino acids	4
sly03040	Spliceosome	3
sly04141	Protein processing in endoplasmic reticulum	3
sly00290	Valine, leucine and isoleucine biosynthesis	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04814	Motor proteins	2
sot03040	Spliceosome	2
sot03008	Ribosome biogenesis in eukaryotes	2
sot03013	Nucleocytoplasmic transport	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	15
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03082	ATP-dependent chromatin remodeling	3
osa03050	Proteasome	2
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	2
zma04712	Circadian rhythm - plant	2
zma00730	Thiamine metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	9
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	2
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu00230	Purine metabolism	2
hvu01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	6
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	3
bdi03015	mRNA surveillance pathway	3
bdi03040	Spliceosome	3
bdi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	3
cre04120	Ubiquitin mediated proteolysis	2
cre03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

828808

832055

837708

103869491

103839291

103837516

125584144

125609228

106410514

107926276

107920130

107942660

102613263

102608432

100801562

100813616

100785454

100243203

100257353

18097813

18104937

18095820

25482078

25486138

11446957

101255948

101254975

101250426

102583610

102590727

102595348

107827228

107831077

107774489

9270800

4344847

4331788

103628560

100273450

103653663

123052545

123104011

123112245

123425891

123427909

123426861

8066818

8057438

8063033

100831361

100840332

100845432

66056515

The preparation time of this page was 1.7 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	3	3	2	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to RBP47B (ath-m.9 coexpression data)

Top 50 enrichment test to RBP47B (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**