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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PAC1   20S proteasome alpha subunit C1 
 ath-u.5   PAC1   20S proteasome alpha subunit C1 
 ath-r.7   PAC1   20S proteasome alpha subunit C1 
 ath-e.2   PAC1   20S proteasome alpha subunit C1 
 ath-m.4.bio   PAC1   20S proteasome alpha subunit C1 
 ath-m.4.hor   PAC1   20S proteasome alpha subunit C1 
 ath-m.4.lig   PAC1   20S proteasome alpha subunit C1 
 ath-m.4.str   PAC1   20S proteasome alpha subunit C1 
 ath-m.4.tis   PAC1   20S proteasome alpha subunit C1 
 ath-u.5   AT4G15165   N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 
 bra-r.6   103868357   proteasome subunit alpha type-4-A 
 bra-r.6   103869118   proteasome subunit alpha type-4-A 
 bra-r.6   103834874   proteasome subunit alpha type-4-A 
 bna-r.1   125609453   proteasome subunit alpha type-4-A-like 
 bna-r.1   125601533   proteasome subunit alpha type-4-A-like 
 bna-r.1   106452413   proteasome subunit alpha type-4-A 
 ghi-r.1   107924340   proteasome subunit alpha type-4 
 ghi-r.1   107911700   proteasome subunit alpha type-4 
 cit-r.1   102616176   proteasome subunit alpha type-4 
 gma-u.5   100793282   proteasome subunit alpha type-4 
 gma-u.5   100786457   proteasome subunit alpha type-4 
 gma-u.5   100802854   proteasome subunit alpha type-4 
 vvi-u.5   100251448   proteasome subunit alpha type-4-like 
 ppo-u.5   7453711   proteasome subunit alpha type-4 
 ppo-u.5   7458487   proteasome subunit alpha type-4 
 mtr-u.5   11409872   proteasome subunit alpha type-4 
 mtr-u.5   11416697   proteasome subunit alpha type-4 
 sly-u.5   101257034   proteasome subunit alpha type-4 
 sot-r.1   102577646   proteasome-like protein alpha subunit 
 sot-r.1   102589450   proteasome subunit alpha type-4-like 
 nta-r.1   107782966   proteasome subunit alpha type-4 
 nta-r.1   107816410   proteasome subunit alpha type-4 
 nta-r.1   107815406   proteasome subunit alpha type-4-like 
 osa-u.5   4340253   proteasome subunit alpha type-4-2-like 
 osa-u.5   107278560   proteasome subunit alpha type-4-1 
 osa-u.5   4340285   proteasome subunit alpha type-4-1 
 zma-u.5   100193140   proteasome subunit alpha type 
 zma-u.5   100191947   proteasome C9 1 
 tae-r.2   123157495   proteasome subunit alpha type-4-1 
 tae-r.2   123165661   proteasome subunit alpha type-4-1 
 tae-r.2   123149921   proteasome subunit alpha type-4-1 
 hvu-r.1   123408052   proteasome subunit alpha type-4-1 
 sbi-r.1   8076156   proteasome subunit alpha type-4-2 
 bdi-r.1   100836430   proteasome subunit alpha type-4-1 
 bdi-r.1   100845272   proteasome subunit alpha type-4-1 
 cre-r.1   CHLRE_10g418100v5   uncharacterized protein 

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Top 50 coexpressed genes to PAC1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAC1 (ath-m.9 coexpression data)

CoexMap"821774"


athPAC1 | Entrez gene ID : 821774      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 2 1 3 1 2 2 1 2 3 3 2 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03050 [list] [network] Proteasome (61 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex  (12 genes)  ISS  
GO:0005839 [list] [network] proteasome core complex  (23 genes)  TAS  
GO:0000502 [list] [network] proteasome complex  (53 genes)  IDA  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0005773 [list] [network] vacuole  (984 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA ISM  
GO MF
Protein NP_188850.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 3,  cyto_mito 3,  mito_plas 3  (predict for NP_188850.1)
Subcellular
localization
TargetP
mito 8,  other 6  (predict for NP_188850.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PAC1
ath-u.5
for
PAC1
ath-r.7
for
PAC1
ath-e.2
for
PAC1
ath-m.4.bio
for
PAC1
ath-m.4.hor
for
PAC1
ath-m.4.lig
for
PAC1
ath-m.4.str
for
PAC1
ath-m.4.tis
for
PAC1
ath-u.5
for
AT4G15165
bra-r.6
for
103868357
bra-r.6
for
103869118
bra-r.6
for
103834874
bna-r.1
for
125609453
bna-r.1
for
125601533
bna-r.1
for
106452413
ghi-r.1
for
107924340
ghi-r.1
for
107911700
cit-r.1
for
102616176
gma-u.5
for
100793282
gma-u.5
for
100786457
gma-u.5
for
100802854
vvi-u.5
for
100251448
ppo-u.5
for
7453711
ppo-u.5
for
7458487
mtr-u.5
for
11409872
mtr-u.5
for
11416697
sly-u.5
for
101257034
sot-r.1
for
102577646
sot-r.1
for
102589450
nta-r.1
for
107782966
nta-r.1
for
107816410
nta-r.1
for
107815406
osa-u.5
for
4340253
osa-u.5
for
107278560
osa-u.5
for
4340285
zma-u.5
for
100193140
zma-u.5
for
100191947
tae-r.2
for
123157495
tae-r.2
for
123165661
tae-r.2
for
123149921
hvu-r.1
for
123408052
sbi-r.1
for
8076156
bdi-r.1
for
100836430
bdi-r.1
for
100845272
cre-r.1
for
CHLRE_10g418100v5


Ortholog ID: 3932
Species ath ath bra bra bra bna bna bna ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sot sot nta nta nta osa osa osa zma zma tae tae tae hvu sbi bdi bdi cre
Symbol PAC1 AT4G15165 LOC103868357 LOC103869118 LOC103834874 LOC106411554 LOC106345534 LOC106396459 LOC107924340 LOC107911700 LOC102616176 LOC100786457 LOC100802854 LOC102662733 LOC100251448 LOC7453711 LOC7458487 LOC11409872 LOC11416697 LOC101257034 LOC102577646 LOC102589450 LOC107782966 LOC107816410 LOC107814160 LOC4340253 LOC107278560 LOC4340285 LOC100193140 LOC100191947 LOC123157495 LOC123165661 LOC123149921 LOC123408052 LOC8076156 LOC100836430 LOC100845272 CHLRE_10g418100v5
Function* 20S proteasome alpha subunit C1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein proteasome subunit alpha type-4-A proteasome subunit alpha type-4-A proteasome subunit alpha type-4-A proteasome subunit alpha type-4-A-like proteasome subunit alpha type-4-A proteasome subunit alpha type-4-A proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome subunit alpha type-4-like proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome-like protein alpha subunit proteasome subunit alpha type-4-like proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome subunit alpha type-4 proteasome subunit alpha type-4-2-like proteasome subunit alpha type-4-1 proteasome subunit alpha type-4-1 proteasome subunit alpha type proteasome C9 1 proteasome subunit alpha type-4-1 proteasome subunit alpha type-4-1 proteasome subunit alpha type-4-1 proteasome subunit alpha type-4-1 proteasome subunit alpha type-4-2 proteasome subunit alpha type-4-1 proteasome subunit alpha type-4-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 17
bra03060 Protein export 2
bra04141 Protein processing in endoplasmic reticulum 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 16
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 16
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 16
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 17
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 10
sot00020 Citrate cycle (TCA cycle) 2
sot01200 Carbon metabolism 2
sot01210 2-Oxocarboxylic acid metabolism 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 17
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03018 RNA degradation 2
nta03040 Spliceosome 2
nta00562 Inositol phosphate metabolism 2
nta00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 9
zma00510 N-Glycan biosynthesis 2
zma00513 Various types of N-glycan biosynthesis 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 12
tae03010 Ribosome 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 9
tae03010 Ribosome 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
sbi04141 Protein processing in endoplasmic reticulum 3
sbi03018 RNA degradation 2
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 5
bdi00510 N-Glycan biosynthesis 2
bdi00513 Various types of N-glycan biosynthesis 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 19
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821774 10723067 103868357 103869118 103834874 106411554 106345534 106396459 107924340 107911700 102616176 100786457 100802854 102662733 100251448 7453711 7458487 11409872 11416697 101257034 102577646 102589450 107782966 107816410 107814160 4340253 107278560 4340285 100193140 100191947 123157495 123165661 123149921 123408052 8076156 100836430 100845272 5728333
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