ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	PAC1	20S proteasome alpha subunit C1
ath-r.7	PAC1	20S proteasome alpha subunit C1
ath-m.9	PAC1	20S proteasome alpha subunit C1
ath-e.2	PAC1	20S proteasome alpha subunit C1
ath-m.4.bio	PAC1	20S proteasome alpha subunit C1
ath-m.4.hor	PAC1	20S proteasome alpha subunit C1
ath-m.4.lig	PAC1	20S proteasome alpha subunit C1
ath-m.4.str	PAC1	20S proteasome alpha subunit C1
ath-m.4.tis	PAC1	20S proteasome alpha subunit C1
ath-u.5	AT4G15165	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
gma-u.5	100793282	proteasome subunit alpha type-4
gma-u.5	100786457	proteasome subunit alpha type-4
gma-u.5	100802854	proteasome subunit alpha type-4
vvi-u.5	100251448	proteasome subunit alpha type-4-like
ppo-u.5	7453711	proteasome subunit alpha type-4
ppo-u.5	7458487	proteasome subunit alpha type-4
mtr-u.5	11409872	proteasome subunit alpha type-4
mtr-u.5	11416697	proteasome subunit alpha type-4
sly-u.5	101257034	proteasome subunit alpha type-4
osa-u.5	4340253	proteasome subunit alpha type-4-2-like
osa-u.5	107278560	proteasome subunit alpha type-4-1
osa-u.5	4340285	proteasome subunit alpha type-4-1
zma-u.5	100193140	proteasome subunit alpha type
zma-u.5	100191947	proteasome C9 1

Annotation

functional annotation

KEGG

ath03050 [list] [network] Proteasome (61 genes)

GO BP

GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process

(219 genes)

TAS

GO CC

GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex	(12 genes)	ISS
GO:0005839 [list] [network] proteasome core complex	(23 genes)	TAS
GO:0000502 [list] [network] proteasome complex	(53 genes)	IDA
GO:0022626 [list] [network] cytosolic ribosome	(295 genes)	HDA
GO:0005773 [list] [network] vacuole	(984 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0005739 [list] [network] mitochondrion	(4244 genes)	HDA ISM

GO MF

Protein

NP_188850.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, chlo 3, cyto_mito 3, mito_plas 3

(predict for NP_188850.1)

Subcellular
localization
TargetP

mito 8, other 6

(predict for NP_188850.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for PAC1	ath-r.7 for PAC1	ath-m.9 for PAC1	ath-e.2 for PAC1	ath-m.4.bio for PAC1	ath-m.4.hor for PAC1	ath-m.4.lig for PAC1	ath-m.4.str for PAC1	ath-m.4.tis for PAC1	ath-u.5 for AT4G15165	gma-u.5 for 100793282	gma-u.5 for 100786457	gma-u.5 for 100802854	vvi-u.5 for 100251448	ppo-u.5 for 7453711	ppo-u.5 for 7458487	mtr-u.5 for 11409872	mtr-u.5 for 11416697	sly-u.5 for 101257034	osa-u.5 for 4340253	osa-u.5 for 107278560	osa-u.5 for 4340285	zma-u.5 for 100193140	zma-u.5 for 100191947

Ortholog

Ortholog ID: 3932

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PAC1

Function^*

20S proteasome alpha subunit C1

N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

proteasome subunit alpha type-4-A

proteasome subunit alpha type-4-A-like

proteasome subunit alpha type-4-A

proteasome subunit alpha type-4

proteasome subunit alpha type-4-like

proteasome subunit alpha type-4

proteasome subunit alpha type-4-like

proteasome-like protein alpha subunit

proteasome subunit alpha type-4

proteasome subunit alpha type-4-2-like

proteasome subunit alpha type-4-1

proteasome subunit alpha type

proteasome C9 1

proteasome subunit alpha type-4-1

proteasome subunit alpha type-4-2

proteasome subunit alpha type-4-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	16
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	16
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	16
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	17
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	17
sot00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	10
sot00020	Citrate cycle (TCA cycle)	2
sot01200	Carbon metabolism	2
sot01210	2-Oxocarboxylic acid metabolism	2
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta03018	RNA degradation	2
nta03040	Spliceosome	2
nta00562	Inositol phosphate metabolism	2
nta00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	9
zma00510	N-Glycan biosynthesis	2
zma00513	Various types of N-glycan biosynthesis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	9
tae03010	Ribosome	2
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	5
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03018	RNA degradation	2
sbi03083	Polycomb repressive complex	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	5
bdi00510	N-Glycan biosynthesis	2
bdi00513	Various types of N-glycan biosynthesis	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	19

Expression

Expression pattern

Entrez Gene ID^*

821774

10723067

103869118

103868357

106411554

106396459

107911700

107924340

102616176

100786457

100802854

100251448

7453711

7458487

11416697

11409872

101257034

102589450

102577646

107814160

107782966

4340253

4340285

100193140

100191947

123149921

123165661

123408052

8076156

100836430

100845272

5728333

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to PAC1 (ath-u.5 coexpression data)

Top 50 enrichment test to PAC1 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	10	3	1	2	2	1	3	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to PAC1 (ath-u.5 coexpression data)

Top 50 enrichment test to PAC1 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**