ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8076156	proteasome subunit alpha type-4-2
zma-u.5	100193140	proteasome subunit alpha type
zma-u.5	100191947	proteasome C9 1
osa-u.5	107278560	proteasome subunit alpha type-4-1
osa-u.5	4340285	proteasome subunit alpha type-4-1
osa-u.5	4340253	proteasome subunit alpha type-4-2-like
ath-u.5	PAC1	20S proteasome alpha subunit C1
ath-u.5	AT4G15165	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
gma-u.5	100793282	proteasome subunit alpha type-4
gma-u.5	100786457	proteasome subunit alpha type-4
gma-u.5	102662733	proteasome subunit alpha type-4
sly-u.5	101257034	proteasome subunit alpha type-4
vvi-u.5	100251448	proteasome subunit alpha type-4-like
ppo-u.5	7458487	proteasome subunit alpha type-4
ppo-u.5	7453711	proteasome subunit alpha type-4
mtr-u.5	11416697	proteasome subunit alpha type-4
mtr-u.5	11409872	proteasome subunit alpha type-4

Annotation

functional annotation

KEGG

sbi03050 [list] [network] Proteasome (59 genes)

GO BP

GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process

(251 genes)

IEA

GO CC

GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex	(12 genes)	IEA
GO:0005839 [list] [network] proteasome core complex	(23 genes)	IEA
GO:0005829 [list] [network] cytosol	(856 genes)	IEA
GO:0005634 [list] [network] nucleus	(2977 genes)	IEA

GO MF

Protein

XP_002437914.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, nucl_plas 2, nucl 1, mito 1, plas 1

(predict for XP_002437914.2)

Subcellular
localization
TargetP

mito 8, other 7

(predict for XP_002437914.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8076156 .	zma-u.5 for 100193140 .	zma-u.5 for 100191947 .	osa-u.5 for 107278560 .	osa-u.5 for 4340285 .	osa-u.5 for 4340253 .	ath-u.5 for PAC1 .	ath-u.5 for AT4G15165 .	gma-u.5 for 100793282 .	gma-u.5 for 100786457 .	gma-u.5 for 102662733 .	sly-u.5 for 101257034 .	vvi-u.5 for 100251448 .	ppo-u.5 for 7458487 .	ppo-u.5 for 7453711 .	mtr-u.5 for 11416697 .	mtr-u.5 for 11409872 .

Ortholog

Ortholog ID: 3932

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

PAC1

Function^*

20S proteasome alpha subunit C1

N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

proteasome subunit alpha type-4

proteasome subunit alpha type-4-2-like

proteasome subunit alpha type-4-1

proteasome subunit alpha type

proteasome C9 1

proteasome subunit alpha type-4-A

proteasome subunit alpha type-4-like

proteasome subunit alpha type-4

proteasome subunit alpha type-4-1

proteasome subunit alpha type-4

proteasome subunit alpha type-4-A-like

proteasome subunit alpha type-4-A

uncharacterized protein

proteasome subunit alpha type-4-2

proteasome subunit alpha type-4-like

proteasome-like protein alpha subunit

proteasome subunit alpha type-4

proteasome subunit alpha type-4-1

proteasome subunit alpha type-4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	17
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	9
zma00510	N-Glycan biosynthesis	2
zma00513	Various types of N-glycan biosynthesis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	9
tae03010	Ribosome	2
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	16
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	16
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	5
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03018	RNA degradation	2
sbi03083	Polycomb repressive complex	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	17
sot00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	10
sot00020	Citrate cycle (TCA cycle)	2
sot01200	Carbon metabolism	2
sot01210	2-Oxocarboxylic acid metabolism	2
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	16
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	5
bdi00510	N-Glycan biosynthesis	2
bdi00513	Various types of N-glycan biosynthesis	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta03018	RNA degradation	2
nta03040	Spliceosome	2
nta00562	Inositol phosphate metabolism	2
nta00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4

Expression

Expression pattern

Entrez Gene ID^*

821774

10723067

100786457

100802854

101257034

4340253

4340285

100193140

100191947

103869118

103868357

100251448

7453711

7458487

11416697

11409872

123149921

123165661

123408052

107911700

107924340

106411554

106396459

5728333

8076156

102589450

102577646

102616176

100836430

100845272

107814160

107782966

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8076156 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8076156 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	ath	gma	sly	vvi	ppo	mtr	bra	nta	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	1	2	3	2	3	1	1	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8076156 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8076156 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**