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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   GHS1   Ribosomal protein S21 family protein 
 ath-u.5   GHS1   Ribosomal protein S21 family protein 
 ath-r.7   GHS1   Ribosomal protein S21 family protein 
 ath-e.2   GHS1   Ribosomal protein S21 family protein 
 ath-m.4.bio   GHS1   Ribosomal protein S21 family protein 
 ath-m.4.hor   GHS1   Ribosomal protein S21 family protein 
 ath-m.4.lig   GHS1   Ribosomal protein S21 family protein 
 ath-m.4.str   GHS1   Ribosomal protein S21 family protein 
 ath-m.4.tis   GHS1   Ribosomal protein S21 family protein 
 bra-r.6   103836981   30S ribosomal protein S21, chloroplastic 
 bra-r.6   103855037   30S ribosomal protein S21, chloroplastic 
 bra-r.6   103854264   30S ribosomal protein S21, chloroplastic 
 bna-r.1   BNAC02G36680D   30S ribosomal protein S21, chloroplastic 
 ghi-r.1   107888855   30S ribosomal protein S21, chloroplastic 
 ghi-r.1   107892168   30S ribosomal protein S21, chloroplastic 
 ghi-r.1   107899715   30S ribosomal protein S21, chloroplastic 
 cit-r.1   102628693   30S ribosomal protein S21, chloroplastic 
 cit-r.1   102620819   30S ribosomal protein S21, chloroplastic 
 gma-u.5   100777605   30S ribosomal protein S21, chloroplastic 
 gma-u.5   100790222   30S ribosomal protein S21, chloroplastic 
 gma-u.5   100780245   30S ribosomal protein S21, chloroplastic 
 vvi-u.5   100241260   small ribosomal subunit protein bS21c 
 ppo-u.5   7456227   30S ribosomal protein S21, chloroplastic 
 mtr-u.5   11405582   30S ribosomal protein S21, chloroplastic 
 mtr-u.5   25497841   30S ribosomal protein S21, chloroplastic 
 sly-u.5   101245346   small ribosomal subunit protein bS21c 
 sly-u.5   101248838   small ribosomal subunit protein bS21c 
 sot-r.1   102594896   uncharacterized LOC102594896 
 sot-r.1   102602305   uncharacterized LOC102602305 
 nta-r.1   107761075   small ribosomal subunit protein bS21c-like 
 nta-r.1   107822371   small ribosomal subunit protein bS21c-like 
 nta-r.1   107809209   uncharacterized LOC107809209 
 osa-u.5   4328558   small ribosomal subunit protein bS21c 
 zma-u.5   100285469   30S ribosomal protein S21, chloroplastic-like 
 zma-u.5   100284221   30S ribosomal protein S21, chloroplastic-like 
 tae-r.2   123127216   30S ribosomal protein S21, chloroplastic 
 tae-r.2   123136814   30S ribosomal protein S21, chloroplastic 
 tae-r.2   123144299   30S ribosomal protein S21, chloroplastic 
 hvu-r.1   123403808   30S ribosomal protein S21, chloroplastic-like 
 sbi-r.1   8079435   30S ribosomal protein S21, chloroplastic 
 bdi-r.1   100828601   30S ribosomal protein S21, chloroplastic 
 cre-r.1   CHLRE_01g017300v5   uncharacterized protein 

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Top 50 coexpressed genes to GHS1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GHS1 (ath-m.9 coexpression data)

CoexMap"822335"


athGHS1 | Entrez gene ID : 822335      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 1 3 2 3 1 1 2 2 2 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO CC
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001327188.1 [sequence] [blastp]
NP_566809.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1  (predict for NP_001327188.1)
chlo 9,  nucl 1  (predict for NP_566809.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001327188.1)
chlo 9  (predict for NP_566809.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
GHS1
ath-u.5
for
GHS1
ath-r.7
for
GHS1
ath-e.2
for
GHS1
ath-m.4.bio
for
GHS1
ath-m.4.hor
for
GHS1
ath-m.4.lig
for
GHS1
ath-m.4.str
for
GHS1
ath-m.4.tis
for
GHS1
bra-r.6
for
103836981
bra-r.6
for
103855037
bra-r.6
for
103854264
bna-r.1
for
BNAC02G36680D
ghi-r.1
for
107888855
ghi-r.1
for
107892168
ghi-r.1
for
107899715
cit-r.1
for
102628693
cit-r.1
for
102620819
gma-u.5
for
100777605
gma-u.5
for
100790222
gma-u.5
for
100780245
vvi-u.5
for
100241260
ppo-u.5
for
7456227
mtr-u.5
for
11405582
mtr-u.5
for
25497841
sly-u.5
for
101245346
sly-u.5
for
101248838
sot-r.1
for
102594896
sot-r.1
for
102602305
nta-r.1
for
107761075
nta-r.1
for
107822371
nta-r.1
for
107809209
osa-u.5
for
4328558
zma-u.5
for
100285469
zma-u.5
for
100284221
tae-r.2
for
123127216
tae-r.2
for
123136814
tae-r.2
for
123144299
hvu-r.1
for
123403808
sbi-r.1
for
8079435
bdi-r.1
for
100828601
cre-r.1
for
CHLRE_01g017300v5


Ortholog ID: 3585
Species ath bra bra bra bna bna ghi ghi ghi cit cit gma gma gma vvi ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol GHS1 LOC103836981 LOC103855037 LOC103854264 BNAC02G36680D BNAA02G28660D LOC107899715 LOC121232061 LOC121219331 LOC102628693 LOC102620819 LOC100777605 LOC100812464 LOC102661132 LOC100241260 LOC7456227 LOC11405582 LOC25497841 LOC101245346 LOC101248838 LOC102594896 LOC102602305 LOC107761075 LOC107822371 LOC4328558 LOC100285469 LOC100284221 LOC123127216 LOC123136814 LOC123144299 LOC123403808 LOC8079435 LOC100828601 CHLRE_01g017300v5
Function* Ribosomal protein S21 family protein 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic small ribosomal subunit protein bS21c 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic small ribosomal subunit protein bS21c small ribosomal subunit protein bS21c uncharacterized LOC102594896 uncharacterized LOC102602305 small ribosomal subunit protein bS21c-like small ribosomal subunit protein bS21c-like small ribosomal subunit protein bS21c 30S ribosomal protein S21, chloroplastic-like 30S ribosomal protein S21, chloroplastic-like 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic-like 30S ribosomal protein S21, chloroplastic 30S ribosomal protein S21, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 10
bra00860 Porphyrin metabolism 4
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00010 Glycolysis / Gluconeogenesis 5
cit01230 Biosynthesis of amino acids 5
cit01200 Carbon metabolism 4
cit00710 Carbon fixation by Calvin cycle 3
cit00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 11
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822335 103836981 103855037 103854264 106389336 106402093 107899715 121232061 121219331 102628693 102620819 100777605 100812464 102661132 100241260 7456227 11405582 25497841 101245346 101248838 102594896 102602305 107761075 107822371 4328558 100285469 100284221 123127216 123136814 123144299 123403808 8079435 100828601 5715142
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