ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102602305	uncharacterized LOC102602305
sot-r.1	102594896	uncharacterized LOC102594896
sly-u.5	101248838	small ribosomal subunit protein bS21c
sly-u.5	101245346	small ribosomal subunit protein bS21c
nta-r.1	107822371	small ribosomal subunit protein bS21c-like
nta-r.1	107809209	uncharacterized LOC107809209
nta-r.1	107767513	small ribosomal subunit protein bS21c
ath-u.5	GHS1	Ribosomal protein S21 family protein
gma-u.5	100780245	30S ribosomal protein S21, chloroplastic
gma-u.5	100812464	30S ribosomal protein S21, chloroplastic
gma-u.5	102661132	30S ribosomal protein S21, chloroplastic
bra-r.6	103836981	30S ribosomal protein S21, chloroplastic
bra-r.6	103854264	30S ribosomal protein S21, chloroplastic
bra-r.6	103855037	30S ribosomal protein S21, chloroplastic
vvi-u.5	100241260	small ribosomal subunit protein bS21c
ppo-u.5	7456227	30S ribosomal protein S21, chloroplastic
mtr-u.5	25497841	30S ribosomal protein S21, chloroplastic
mtr-u.5	11405582	30S ribosomal protein S21, chloroplastic
ghi-r.1	107899715	30S ribosomal protein S21, chloroplastic
ghi-r.1	107892168	30S ribosomal protein S21, chloroplastic
ghi-r.1	107888855	30S ribosomal protein S21, chloroplastic
bna-r.1	106428884	30S ribosomal protein S21, chloroplastic-like
cit-r.1	102628693	30S ribosomal protein S21, chloroplastic
cit-r.1	102620819	30S ribosomal protein S21, chloroplastic
osa-u.5	4328558	small ribosomal subunit protein bS21c
zma-u.5	100284221	30S ribosomal protein S21, chloroplastic-like
zma-u.5	100285469	30S ribosomal protein S21, chloroplastic-like
tae-r.2	123144299	30S ribosomal protein S21, chloroplastic
tae-r.2	123136814	30S ribosomal protein S21, chloroplastic
tae-r.2	123127216	30S ribosomal protein S21, chloroplastic
hvu-r.1	123403808	30S ribosomal protein S21, chloroplastic-like
sbi-r.1	8079435	30S ribosomal protein S21, chloroplastic
bdi-r.1	100828601	30S ribosomal protein S21, chloroplastic
cre-r.1	CHLRE_01g017300v5	uncharacterized protein

Top 50 coexpressed genes to 102602305 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102602305 (sot-r.1 coexpression data)

CoexMap"102602305"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006412 [list] [network] translation

(522 genes)

IEA

GO CC

GO:0005840 [list] [network] ribosome

(378 genes)

IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(377 genes)

IEA

Protein

XP_006357191.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, cyto 1, extr 1, vacu 1

(predict for XP_006357191.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_006357191.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102602305	sot-r.1 for 102594896	sly-u.5 for 101248838	sly-u.5 for 101245346	nta-r.1 for 107822371	nta-r.1 for 107809209	nta-r.1 for 107767513	ath-u.5 for GHS1	gma-u.5 for 100780245	gma-u.5 for 100812464	gma-u.5 for 102661132	bra-r.6 for 103836981	bra-r.6 for 103854264	bra-r.6 for 103855037	vvi-u.5 for 100241260	ppo-u.5 for 7456227	mtr-u.5 for 25497841	mtr-u.5 for 11405582	ghi-r.1 for 107899715	ghi-r.1 for 107892168	ghi-r.1 for 107888855	bna-r.1 for 106428884	cit-r.1 for 102628693	cit-r.1 for 102620819	osa-u.5 for 4328558	zma-u.5 for 100284221	zma-u.5 for 100285469	tae-r.2 for 123144299	tae-r.2 for 123136814	tae-r.2 for 123127216	hvu-r.1 for 123403808	sbi-r.1 for 8079435	bdi-r.1 for 100828601	cre-r.1 for CHLRE_01g017300v5

Ortholog

Ortholog ID: 3585

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

GHS1

Function^*

uncharacterized LOC102602305

uncharacterized LOC102594896

small ribosomal subunit protein bS21c

small ribosomal subunit protein bS21c-like

Ribosomal protein S21 family protein

30S ribosomal protein S21, chloroplastic

small ribosomal subunit protein bS21c

30S ribosomal protein S21, chloroplastic

small ribosomal subunit protein bS21c

30S ribosomal protein S21, chloroplastic-like

30S ribosomal protein S21, chloroplastic

30S ribosomal protein S21, chloroplastic-like

30S ribosomal protein S21, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	10
bra00860	Porphyrin metabolism	4
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00010	Glycolysis / Gluconeogenesis	5
cit01230	Biosynthesis of amino acids	5
cit01200	Carbon metabolism	4
cit00710	Carbon fixation by Calvin cycle	3
cit00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	11
cre00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
cre01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

102602305

102594896

101248838

101245346

107822371

107761075

822335

100812464

102661132

100777605

103836981

103854264

103855037

100241260

7456227

25497841

11405582

107899715

121219331

121232061

106402093

106389336

102628693

102620819

4328558

100284221

100285469

123144299

123136814

123127216

123403808

8079435

100828601

5715142

The preparation time of this page was 0.1 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	2	3	1	3	3	1	1	2	3	1	2	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102602305 (sot-r.1 coexpression data)

Top 50 enrichment test to 102602305 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**