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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-u.5   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-r.7   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-e.2   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.4.bio   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.4.hor   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.4.lig   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.4.str   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.4.tis   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 bra-r.6   103873241   chlorophyll a-b binding protein 4, chloroplastic 
 bna-r.1   106435287   chlorophyll a-b binding protein 4, chloroplastic 
 bna-r.1   106451196   chlorophyll a-b binding protein 4, chloroplastic 
 ghi-r.1   107926709   chlorophyll a-b binding protein 4, chloroplastic 
 ghi-r.1   107953509   chlorophyll a-b binding protein 4, chloroplastic 
 ghi-r.1   107934271   chlorophyll a-b binding protein P4, chloroplastic 
 cit-r.1   102630539   chlorophyll a-b binding protein P4, chloroplastic 
 gma-u.5   100802922   chlorophyll a-b binding protein P4, chloroplastic 
 gma-u.5   100798548   chlorophyll a-b binding protein P4, chloroplastic 
 vvi-u.5   100232934   chlorophyll a-b binding protein 4, chloroplastic 
 ppo-u.5   18105790   chlorophyll a-b binding protein P4, chloroplastic 
 mtr-u.5   25490405   chlorophyll a-b binding protein P4, chloroplastic 
 sly-u.5   CAB12   chlorophyll a-b binding protein Cab12 
 sly-u.5   CAB11   chlorophyll a-b binding protein CAB11 
 sot-r.1   102583646   chlorophyll a-b binding protein 4, chloroplastic-like 
 sot-r.1   102596966   chlorophyll a-b binding protein 4, chloroplastic-like 
 nta-r.1   107830543   chlorophyll a-b binding protein 4, chloroplastic 
 nta-r.1   107811419   chlorophyll a-b binding protein P4, chloroplastic 
 nta-r.1   107774933   chlorophyll a-b binding protein P4, chloroplastic 
 osa-u.5   4345663   chlorophyll a-b binding protein P4, chloroplastic 
 zma-u.5   100280410   chlorophyll a-b binding protein 4 
 zma-u.5   100284001   uncharacterized LOC100284001 
 tae-r.2   123103904   chlorophyll a-b binding protein 1B-20, chloroplastic 
 tae-r.2   123121683   chlorophyll a-b binding protein 1B-20, chloroplastic 
 tae-r.2   123112135   chlorophyll a-b binding protein 1B-20, chloroplastic 
 hvu-r.1   123398322   chlorophyll a-b binding protein 1B-20, chloroplastic 
 sbi-r.1   110437218   chlorophyll a-b binding protein 4, chloroplastic 
 bdi-r.1   100833322   chlorophyll a-b binding protein 1B-20, chloroplastic 
 bdi-r.1   100830344   chlorophyll a-b binding protein 4, chloroplastic 
 cre-r.1   CHLRE_06g278213v5   uncharacterized protein 
 cre-r.1   CHLRE_10g452050v5   uncharacterized protein 
 cre-r.1   CHLRE_10g425900v5   uncharacterized protein 

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Top 50 coexpressed genes to LHCA4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LHCA4 (ath-m.9 coexpression data)

CoexMap"823901"


athLHCA4 | Entrez gene ID : 823901      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 1 1 2 2 3 1 2 3 1 1 2 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (10 genes)  IDA  
GO:0009645 [list] [network] response to low light intensity stimulus  (20 genes)  IEP  
GO:0009644 [list] [network] response to high light intensity  (71 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (21 genes)  NAS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_190331.3 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 4  (predict for NP_190331.3)
Subcellular
localization
TargetP
chlo 8  (predict for NP_190331.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
LHCA4
ath-u.5
for
LHCA4
ath-r.7
for
LHCA4
ath-e.2
for
LHCA4
ath-m.4.bio
for
LHCA4
ath-m.4.hor
for
LHCA4
ath-m.4.lig
for
LHCA4
ath-m.4.str
for
LHCA4
ath-m.4.tis
for
LHCA4
bra-r.6
for
103873241
bna-r.1
for
106435287
bna-r.1
for
106451196
ghi-r.1
for
107926709
ghi-r.1
for
107953509
ghi-r.1
for
107934271
cit-r.1
for
102630539
gma-u.5
for
100802922
gma-u.5
for
100798548
vvi-u.5
for
100232934
ppo-u.5
for
18105790
mtr-u.5
for
25490405
sly-u.5
for
CAB12
sly-u.5
for
CAB11
sot-r.1
for
102583646
sot-r.1
for
102596966
nta-r.1
for
107830543
nta-r.1
for
107811419
nta-r.1
for
107774933
osa-u.5
for
4345663
zma-u.5
for
100280410
zma-u.5
for
100284001
tae-r.2
for
123103904
tae-r.2
for
123121683
tae-r.2
for
123112135
hvu-r.1
for
123398322
sbi-r.1
for
110437218
bdi-r.1
for
100833322
bdi-r.1
for
100830344
cre-r.1
for
CHLRE_06g278213v5
cre-r.1
for
CHLRE_10g452050v5
cre-r.1
for
CHLRE_10g425900v5


Ortholog ID: 6014
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi bdi cre cre cre
Symbol LHCA4 LOC103873241 LOC106435287 LOC106451196 LOC107953509 LOC107934271 LOC107946523 LOC102630539 LOC100802922 LOC100798548 LOC100232934 LOC18105790 LOC25490405 CAB12 CAB11 LOC102583646 LOC102596966 LOC107830543 LOC107811419 LOC142176518 LOC4345663 LOC100280410 LOC100284001 LOC123103904 LOC123121683 LOC123112135 LOC123398322 LOC110437218 LOC100833322 LOC100830344 CHLRE_06g278213v5 CHLRE_10g452050v5 CHLRE_10g425900v5
Function* light-harvesting chlorophyll-protein complex I subunit A4 chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein Cab12 chlorophyll a-b binding protein CAB11 chlorophyll a-b binding protein 4, chloroplastic-like chlorophyll a-b binding protein 4, chloroplastic-like chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic-like chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein 4 uncharacterized LOC100284001 chlorophyll a-b binding protein 1B-20, chloroplastic chlorophyll a-b binding protein 1B-20, chloroplastic chlorophyll a-b binding protein 1B-20, chloroplastic chlorophyll a-b binding protein 1B-20, chloroplastic chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein 1B-20, chloroplastic chlorophyll a-b binding protein 4, chloroplastic uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 12
ath00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 13
bra00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 9
cit00195 Photosynthesis 3
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 11
gma00195 Photosynthesis 7
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 13
gma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00196 Photosynthesis - antenna proteins 10
vvi00195 Photosynthesis 3
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 9
ppo00196 Photosynthesis - antenna proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 6
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 15
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 14
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 11
osa00195 Photosynthesis 5
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 15
zma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 14
zma00195 Photosynthesis 3
zma00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 13
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 16
tae00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 8
hvu00196 Photosynthesis - antenna proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 13
sbi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 11
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 9
bdi00195 Photosynthesis 7
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00196 Photosynthesis - antenna proteins 7
cre00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00196 Photosynthesis - antenna proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00196 Photosynthesis - antenna proteins 8
cre00195 Photosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823901 103873241 106435287 106451196 107953509 107934271 107946523 102630539 100802922 100798548 100232934 18105790 25490405 101256006 101268669 102583646 102596966 107830543 107811419 142176518 4345663 100280410 100284001 123103904 123121683 123112135 123398322 110437218 100833322 100830344 5723627 5723894 5728187
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