ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_06g278213v5	uncharacterized protein
cre-r.1	CHLRE_10g452050v5	uncharacterized protein
cre-r.1	CHLRE_10g425900v5	uncharacterized protein
ath-u.5	LHCA4	light-harvesting chlorophyll-protein complex I subunit A4
gma-u.5	100802922	chlorophyll a-b binding protein P4, chloroplastic
gma-u.5	100798548	chlorophyll a-b binding protein P4, chloroplastic
sly-u.5	CAB11	chlorophyll a-b binding protein CAB11
sly-u.5	CAB12	chlorophyll a-b binding protein Cab12
osa-u.5	4345663	chlorophyll a-b binding protein P4, chloroplastic
zma-u.5	100280410	chlorophyll a-b binding protein 4
zma-u.5	100284001	uncharacterized LOC100284001
bra-r.6	103873241	chlorophyll a-b binding protein 4, chloroplastic
vvi-u.5	100232934	chlorophyll a-b binding protein 4, chloroplastic
ppo-u.5	18105790	chlorophyll a-b binding protein P4, chloroplastic
mtr-u.5	25490405	chlorophyll a-b binding protein P4, chloroplastic
tae-r.2	123103904	chlorophyll a-b binding protein 1B-20, chloroplastic
tae-r.2	123112135	chlorophyll a-b binding protein 1B-20, chloroplastic
tae-r.2	123121683	chlorophyll a-b binding protein 1B-20, chloroplastic
hvu-r.1	123398322	chlorophyll a-b binding protein 1B-20, chloroplastic
ghi-r.1	107926709	chlorophyll a-b binding protein 4, chloroplastic
ghi-r.1	107934271	chlorophyll a-b binding protein P4, chloroplastic
ghi-r.1	107953509	chlorophyll a-b binding protein 4, chloroplastic
bna-r.1	106435287	chlorophyll a-b binding protein 4, chloroplastic
bna-r.1	106451196	chlorophyll a-b binding protein 4, chloroplastic
sbi-r.1	110437218	chlorophyll a-b binding protein 4, chloroplastic
sot-r.1	102583646	chlorophyll a-b binding protein 4, chloroplastic-like
sot-r.1	102596966	chlorophyll a-b binding protein 4, chloroplastic-like
cit-r.1	102630539	chlorophyll a-b binding protein P4, chloroplastic
bdi-r.1	100833322	chlorophyll a-b binding protein 1B-20, chloroplastic
bdi-r.1	100830344	chlorophyll a-b binding protein 4, chloroplastic
nta-r.1	107830543	chlorophyll a-b binding protein 4, chloroplastic
nta-r.1	107811419	chlorophyll a-b binding protein P4, chloroplastic
nta-r.1	107774933	chlorophyll a-b binding protein P4, chloroplastic

Top 50 coexpressed genes to CHLRE_06g278213v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_06g278213v5 (cre-r.1 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

uncharacterized protein

KEGG

cre00196 [list] [network] Photosynthesis - antenna proteins (20 genes)

GO BP

GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I	(25 genes)	IEA
GO:0009416 [list] [network] response to light stimulus	(39 genes)	IEA

GO CC

GO:0016020 [list] [network] membrane

(1543 genes)

IEA

GO MF

Protein

XP_001698070.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, chlo 4

(predict for XP_001698070.1)

Subcellular
localization
TargetP

mito 8, chlo 3

(predict for XP_001698070.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g278213v5	cre-r.1 for CHLRE_10g452050v5	cre-r.1 for CHLRE_10g425900v5	ath-u.5 for LHCA4	gma-u.5 for 100802922	gma-u.5 for 100798548	sly-u.5 for CAB11	sly-u.5 for CAB12	osa-u.5 for 4345663	zma-u.5 for 100280410	zma-u.5 for 100284001	bra-r.6 for 103873241	vvi-u.5 for 100232934	ppo-u.5 for 18105790	mtr-u.5 for 25490405	tae-r.2 for 123103904	tae-r.2 for 123112135	tae-r.2 for 123121683	hvu-r.1 for 123398322	ghi-r.1 for 107926709	ghi-r.1 for 107934271	ghi-r.1 for 107953509	bna-r.1 for 106435287	bna-r.1 for 106451196	sbi-r.1 for 110437218	sot-r.1 for 102583646	sot-r.1 for 102596966	cit-r.1 for 102630539	bdi-r.1 for 100833322	bdi-r.1 for 100830344	nta-r.1 for 107830543	nta-r.1 for 107811419	nta-r.1 for 107774933

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Ortholog

Ortholog ID: 6014

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

LHCA4

CAB11

CAB12

Function^*

uncharacterized protein

light-harvesting chlorophyll-protein complex I subunit A4