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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-r.7   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.9   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-e.2   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.4.bio   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.4.hor   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.4.lig   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.4.str   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 ath-m.4.tis   LHCA4   light-harvesting chlorophyll-protein complex I subunit A4 
 gma-u.5   100802922   chlorophyll a-b binding protein P4, chloroplastic 
 gma-u.5   100798548   chlorophyll a-b binding protein P4, chloroplastic 
 vvi-u.5   100232934   chlorophyll a-b binding protein 4, chloroplastic 
 ppo-u.5   18105790   chlorophyll a-b binding protein P4, chloroplastic 
 mtr-u.5   25490405   chlorophyll a-b binding protein P4, chloroplastic 
 sly-u.5   CAB12   chlorophyll a-b binding protein Cab12 
 sly-u.5   CAB11   chlorophyll a-b binding protein CAB11 
 osa-u.5   4345663   chlorophyll a-b binding protein P4, chloroplastic 
 zma-u.5   100280410   chlorophyll a-b binding protein 4 
 zma-u.5   100284001   uncharacterized LOC100284001 

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Top 50 coexpressed genes to LHCA4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LHCA4 (ath-u.5 coexpression data)

CoexMap"823901"


athLHCA4 | Entrez gene ID : 823901      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 1 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (10 genes)  IDA  
GO:0009645 [list] [network] response to low light intensity stimulus  (20 genes)  IEP  
GO:0009644 [list] [network] response to high light intensity  (71 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (21 genes)  NAS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_190331.3 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 4  (predict for NP_190331.3)
Subcellular
localization
TargetP
chlo 8  (predict for NP_190331.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LHCA4

.
ath-r.7
for
LHCA4

.
ath-m.9
for
LHCA4

.
ath-e.2
for
LHCA4

.
ath-m.4.bio
for
LHCA4

.
ath-m.4.hor
for
LHCA4

.
ath-m.4.lig
for
LHCA4

.
ath-m.4.str
for
LHCA4

.
ath-m.4.tis
for
LHCA4

.
gma-u.5
for
100802922

.
gma-u.5
for
100798548

.
vvi-u.5
for
100232934

.
ppo-u.5
for
18105790

.
mtr-u.5
for
25490405

.
sly-u.5
for
CAB12

.
sly-u.5
for
CAB11

.
osa-u.5
for
4345663

.
zma-u.5
for
100280410

.
zma-u.5
for
100284001

.


Ortholog ID: 6014
Species ath gma gma sly sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot sot cit bdi bdi nta nta
Symbol LHCA4 LOC100798548 LOC100802922 CAB12 CAB11 LOC4345663 LOC100280410 LOC100284001 LOC103873241 LOC100232934 LOC18105790 LOC25490405 LOC123121683 LOC123103904 LOC123398322 LOC107946523 LOC107934271 LOC106435287 LOC106451196 CHLRE_10g425900v5 CHLRE_06g278213v5 LOC110437218 LOC102583646 LOC102596966 LOC102630539 LOC100833322 LOC100830344 LOC142176518 LOC107830543
Function* light-harvesting chlorophyll-protein complex I subunit A4 chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein Cab12 chlorophyll a-b binding protein CAB11 chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein 4 uncharacterized LOC100284001 chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein 1B-20, chloroplastic chlorophyll a-b binding protein 1B-20, chloroplastic chlorophyll a-b binding protein 1B-20, chloroplastic chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic uncharacterized protein uncharacterized protein chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic-like chlorophyll a-b binding protein 4, chloroplastic-like chlorophyll a-b binding protein P4, chloroplastic chlorophyll a-b binding protein 1B-20, chloroplastic chlorophyll a-b binding protein 4, chloroplastic chlorophyll a-b binding protein 4, chloroplastic-like chlorophyll a-b binding protein 4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 12
ath00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 13
gma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 11
gma00195 Photosynthesis 7
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 15
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 14
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 11
osa00195 Photosynthesis 5
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 15
zma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 14
zma00195 Photosynthesis 3
zma00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 13
bra00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00196 Photosynthesis - antenna proteins 10
vvi00195 Photosynthesis 3
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 9
ppo00196 Photosynthesis - antenna proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 6
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 16
tae00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 13
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 8
hvu00196 Photosynthesis - antenna proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00196 Photosynthesis - antenna proteins 8
cre00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00196 Photosynthesis - antenna proteins 7
cre00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 13
sbi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 9
cit00195 Photosynthesis 3
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 11
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 9
bdi00195 Photosynthesis 7
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 18
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823901 100798548 100802922 101256006 101268669 4345663 100280410 100284001 103873241 100232934 18105790 25490405 123121683 123103904 123398322 107946523 107934271 106435287 106451196 5728187 5723627 110437218 102583646 102596966 102630539 100833322 100830344 142176518 107830543
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