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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AtCDC48B   ATPase, AAA-type, CDC48 protein 
 ath-u.5   AtCDC48B   ATPase, AAA-type, CDC48 protein 
 ath-r.7   AtCDC48B   ATPase, AAA-type, CDC48 protein 
 ath-e.2   AtCDC48B   ATPase, AAA-type, CDC48 protein 
 ath-m.4.bio   AtCDC48B   ATPase, AAA-type, CDC48 protein 
 ath-m.4.hor   AtCDC48B   ATPase, AAA-type, CDC48 protein 
 ath-m.4.lig   AtCDC48B   ATPase, AAA-type, CDC48 protein 
 ath-m.4.str   AtCDC48B   ATPase, AAA-type, CDC48 protein 
 ath-m.4.tis   AtCDC48B   ATPase, AAA-type, CDC48 protein 
 ath-u.5   CDC48   cell division cycle 48 
 ath-u.5   CDC48C   cell division cycle 48C 
 bra-r.6   103842285   cell division control protein 48 homolog D 
 bra-r.6   103859279   cell division control protein 48 homolog A 
 bna-r.1   106382582   cell division control protein 48 homolog D 
 bna-r.1   106387534   cell division control protein 48 homolog C 
 bna-r.1   106388676   cell division control protein 48 homolog C-like 
 ghi-r.1   107899473   cell division cycle protein 48 homolog 
 ghi-r.1   107919937   calmodulin-interacting protein 111 
 ghi-r.1   107920231   cell division control protein 48 homolog C 
 cit-r.1   102611590   cell division cycle protein 48 homolog 
 cit-r.1   102612408   cell division cycle protein 48 homolog 
 gma-u.5   CDC48   plamsma membrane-associated AAA-ATPase 
 gma-u.5   100800513   cell division control protein 48 homolog C 
 gma-u.5   100798680   cell division cycle protein 48 homolog 
 vvi-u.5   100265402   cell division cycle protein 48 homolog 
 vvi-u.5   100258668   cell division cycle protein 48 homolog 
 vvi-u.5   100261441   cell division control protein 48 homolog C 
 ppo-u.5   18100167   cell division cycle protein 48 homolog 
 ppo-u.5   7479654   calmodulin-interacting protein 111 
 mtr-u.5   11422692   calmodulin-interacting protein 111 
 mtr-u.5   11432951   cell division control protein 48 homolog D 
 mtr-u.5   25483983   cell division control protein 48 homolog E 
 sly-u.5   101246391   cell division cycle protein 48 homolog 
 sly-u.5   101245092   cell division control protein 48 homolog C 
 sly-u.5   101259229   cell division cycle protein 48 homolog 
 sot-r.1   102589113   cell division cycle protein 48 homolog 
 sot-r.1   102602391   cell division control protein 48 homolog C-like 
 sot-r.1   102584989   cell division cycle protein 48 homolog 
 nta-r.1   107831296   cell division control protein 48 homolog C 
 nta-r.1   107790858   cell division cycle protein 48 homolog 
 nta-r.1   107769727   calmodulin-interacting protein 111 
 osa-u.5   4339880   cell division control protein 48 homolog C 
 osa-u.5   4331645   cell division cycle protein 48 homolog 
 zma-u.5   103639569   cell division control protein 48 homolog E 
 zma-u.5   100278319   uncharacterized LOC100278319 
 zma-u.5   100279295   Cell division control protein 48 homolog C 
 tae-r.2   123072171   cell division control protein 48 homolog C 
 tae-r.2   123049926   cell division control protein 48 homolog E-like 
 tae-r.2   123053108   cell division control protein 48 homolog E 
 hvu-r.1   123399786   cell division control protein 48 homolog E-like 
 hvu-r.1   123399795   cell division control protein 48 homolog E-like 
 sbi-r.1   8067906   cell division control protein 48 homolog C 
 sbi-r.1   8073902   cell division control protein 48 homolog E 
 bdi-r.1   100821246   cell division control protein 48 homolog E 
 bdi-r.1   100821547   cell division control protein 48 homolog E 
 bdi-r.1   100843494   cell division control protein 48 homolog C 
 cre-r.1   CHLRE_09g401182v5   uncharacterized protein 
 cre-r.1   CHLRE_06g269950v5   uncharacterized protein 
 cre-r.1   CHLRE_09g398550v5   uncharacterized protein 

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Top 50 coexpressed genes to AtCDC48B (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AtCDC48B (ath-m.9 coexpression data)

CoexMap"824489"


athAtCDC48B | Entrez gene ID : 824489      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 2 3 3 2 3 3 2 3 3 3 3 2 3 3 2 2 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04141 [list] [network] Protein processing in endoplasmic reticulum (220 genes)
GO BP
GO:0045732 [list] [network] positive regulation of protein catabolic process  (8 genes)  IDA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_190891.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  chlo 1,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for NP_190891.1)
Subcellular
localization
TargetP
other 8  (predict for NP_190891.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AtCDC48B
ath-u.5
for
AtCDC48B
ath-r.7
for
AtCDC48B
ath-e.2
for
AtCDC48B
ath-m.4.bio
for
AtCDC48B
ath-m.4.hor
for
AtCDC48B
ath-m.4.lig
for
AtCDC48B
ath-m.4.str
for
AtCDC48B
ath-m.4.tis
for
AtCDC48B
ath-u.5
for
CDC48
ath-u.5
for
CDC48C
bra-r.6
for
103842285
bra-r.6
for
103859279
bna-r.1
for
106382582
bna-r.1
for
106387534
bna-r.1
for
106388676
ghi-r.1
for
107899473
ghi-r.1
for
107919937
ghi-r.1
for
107920231
cit-r.1
for
102611590
cit-r.1
for
102612408
gma-u.5
for
CDC48
gma-u.5
for
100800513
gma-u.5
for
100798680
vvi-u.5
for
100265402
vvi-u.5
for
100258668
vvi-u.5
for
100261441
ppo-u.5
for
18100167
ppo-u.5
for
7479654
mtr-u.5
for
11422692
mtr-u.5
for
11432951
mtr-u.5
for
25483983
sly-u.5
for
101246391
sly-u.5
for
101245092
sly-u.5
for
101259229
sot-r.1
for
102589113
sot-r.1
for
102602391
sot-r.1
for
102584989
nta-r.1
for
107831296
nta-r.1
for
107790858
nta-r.1
for
107769727
osa-u.5
for
4339880
osa-u.5
for
4331645
zma-u.5
for
103639569
zma-u.5
for
100278319
zma-u.5
for
100279295
tae-r.2
for
123072171
tae-r.2
for
123049926
tae-r.2
for
123053108
hvu-r.1
for
123399786
hvu-r.1
for
123399795
sbi-r.1
for
8067906
sbi-r.1
for
8073902
bdi-r.1
for
100821246
bdi-r.1
for
100821547
bdi-r.1
for
100843494
cre-r.1
for
CHLRE_09g401182v5
cre-r.1
for
CHLRE_06g269950v5
cre-r.1
for
CHLRE_09g398550v5


Ortholog ID: 216
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae sbi sbi sbi bdi bdi cre cre cre
Symbol CDC48C CIP111 AtCDC48C LOC103859279 LOC103841568 LOC103870514 LOC106427942 LOC106439184 LOC106452770 LOC107899473 LOC107919937 LOC107931226 LOC102609758 LOC102630724 CDC48 LOC100800513 LOC100791603 LOC100265402 LOC100258668 LOC100261441 LOC7464706 LOC7484424 LOC25483983 LOC25488675 LOC101264384 LOC101265798 LOC101266255 LOC102588443 LOC102600837 LOC102597683 LOC107831296 LOC107791620 LOC107802633 LOC4331645 LOC4348731 LOC4350096 LOC103639569 LOC103637006 LOC103633408 LOC123109893 LOC8067906 LOC8073902 LOC8060059 LOC100821547 LOC100834048 CHLRE_09g401182v5 CHLRE_06g269950v5 CHLRE_09g398550v5
Function* cell division cycle 48C Cam interacting protein 111 ATPase, AAA-type, CDC48 protein cell division control protein 48 homolog A calmodulin-interacting protein 111 cell division control protein 48 homolog A cell division control protein 48 homolog A cell division control protein 48 homolog A cell division control protein 48 homolog A cell division cycle protein 48 homolog calmodulin-interacting protein 111 cell division cycle protein 48 homolog cell division cycle protein 48 homolog cell division cycle protein 48 homolog plamsma membrane-associated AAA-ATPase cell division control protein 48 homolog C cell division cycle protein 48 homolog cell division cycle protein 48 homolog cell division cycle protein 48 homolog cell division control protein 48 homolog C cell division control protein 48 homolog C cell division cycle protein 48 homolog cell division control protein 48 homolog E cell division control protein 48 homolog C calmodulin-interacting protein 111-like cell division cycle protein 48 homolog cell division cycle protein 48 homolog cell division control protein 48 homolog C-like cell division cycle protein 48 homolog cell division cycle protein 48 homolog cell division control protein 48 homolog C cell division cycle protein 48 homolog cell division cycle protein 48 homolog cell division cycle protein 48 homolog cell division control protein 48 homolog E calmodulin-interacting protein 111 cell division control protein 48 homolog E cell division control protein 48 homolog C cell division control protein 48 homolog C calmodulin-interacting protein 111 cell division control protein 48 homolog C cell division control protein 48 homolog E calmodulin-interacting protein 111 cell division control protein 48 homolog E calmodulin-interacting protein 111 uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 7
ath03040 Spliceosome 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 6
ath03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 9
bra04141 Protein processing in endoplasmic reticulum 4
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 7
bra04141 Protein processing in endoplasmic reticulum 5
bra04144 Endocytosis 4
bra03250 Viral life cycle - HIV-1 3
bra03272 Virion - Hepatitis viruses 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 8
bna01200 Carbon metabolism 2
bna01210 2-Oxocarboxylic acid metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 8
bna03050 Proteasome 4
bna00620 Pyruvate metabolism 3
bna00710 Carbon fixation by Calvin cycle 3
bna01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 8
bna00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 7
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 7
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 10
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 5
gma03050 Proteasome 3
gma00010 Glycolysis / Gluconeogenesis 3
gma00620 Pyruvate metabolism 3
gma00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 5
vvi04120 Ubiquitin mediated proteolysis 2
vvi00020 Citrate cycle (TCA cycle) 2
vvi01200 Carbon metabolism 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03040 Spliceosome 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 6
mtr04141 Protein processing in endoplasmic reticulum 6
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 3
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 6
sot04141 Protein processing in endoplasmic reticulum 3
sot00020 Citrate cycle (TCA cycle) 2
sot00785 Lipoic acid metabolism 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 7
nta03008 Ribosome biogenesis in eukaryotes 6
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta03015 mRNA surveillance pathway 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00051 Fructose and mannose metabolism 2
nta00052 Galactose metabolism 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 4
osa01200 Carbon metabolism 3
osa00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 8
sbi04141 Protein processing in endoplasmic reticulum 5
sbi04120 Ubiquitin mediated proteolysis 3
sbi00071 Fatty acid degradation 2
sbi00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 9
bdi04120 Ubiquitin mediated proteolysis 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03018 RNA degradation 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 14
cre04141 Protein processing in endoplasmic reticulum 3
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821105 824836 831870 103859279 103841568 103870514 106427942 106439184 106452770 107899473 107919937 107931226 102609758 102630724 547850 100800513 100791603 100265402 100258668 100261441 7464706 7484424 25483983 25488675 101264384 101265798 101266255 102588443 102600837 102597683 107831296 107791620 107802633 4331645 4348731 4350096 103639569 103637006 103633408 123109893 8067906 8073902 8060059 100821547 100834048 5723159 5721861 5720210
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