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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102584989   cell division cycle protein 48 homolog 
 sly-u.5   101245092   cell division control protein 48 homolog C 
 sly-u.5   101259229   cell division cycle protein 48 homolog 
 sly-u.5   101266255   cell division cycle protein 48 homolog 
 ath-u.5   AtCDC48C   ATPase, AAA-type, CDC48 protein 
 ath-u.5   CIP111   Cam interacting protein 111 
 ath-u.5   AtCDC48B   ATPase, AAA-type, CDC48 protein 
 gma-u.5   100799580   cell division cycle protein 48 homolog 
 gma-u.5   100814141   cell division cycle protein 48 homolog 
 gma-u.5   100806067   cell division cycle protein 48 homolog 
 vvi-u.5   100265402   cell division cycle protein 48 homolog 
 vvi-u.5   100261441   cell division control protein 48 homolog C 
 vvi-u.5   100258668   cell division cycle protein 48 homolog 
 ppo-u.5   7467628   cell division cycle protein 48 homolog 
 ppo-u.5   18100167   cell division cycle protein 48 homolog 
 mtr-u.5   11432951   cell division control protein 48 homolog D 
 mtr-u.5   11422689   calmodulin-interacting protein 111 
 mtr-u.5   11421160   cell division control protein 48 homolog C 
 osa-u.5   4348731   cell division control protein 48 homolog E 
 osa-u.5   4331645   cell division cycle protein 48 homolog 
 osa-u.5   4339880   cell division control protein 48 homolog C 
 zma-u.5   100502003   uncharacterized LOC100502003 
 zma-u.5   pco097024a   Cell division control protein 48 homolog D 
 zma-u.5   100278319   uncharacterized LOC100278319 

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Top 50 coexpressed genes to 102584989 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102584989 (sot-r.1 coexpression data)

CoexMap"102584989"


sotLOC102584989 | Entrez gene ID : 102584989    
Species sot sly ath gma vvi ppo mtr osa zma hvu tae nta bra cit ghi bna bdi sbi cre
Paralog 1 3 3 3 3 2 3 3 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot04141 [list] [network] Protein processing in endoplasmic reticulum (261 genes)
GO BP
GO:0051228 [list] [network] mitotic spindle disassembly  (5 genes)  IEA  
GO:0030970 [list] [network] retrograde protein transport, ER to cytosol  (6 genes)  IEA  
GO:0097352 [list] [network] autophagosome maturation  (6 genes)  IEA  
GO CC
GO:0034098 [list] [network] VCP-NPL4-UFD1 AAA ATPase complex  (8 genes)  IEA  
GO:0005829 [list] [network] cytosol  (756 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2556 genes)  IEA  
GO MF
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (25 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (431 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2117 genes)  IEA  
Protein XP_006339079.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1,  mito 1  (predict for XP_006339079.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_006339079.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102584989

.
sly-u.5
for
101245092

.
sly-u.5
for
101259229

.
sly-u.5
for
101266255

.
ath-u.5
for
AtCDC48C

.
ath-u.5
for
CIP111

.
ath-u.5
for
AtCDC48B

.
gma-u.5
for
100799580

.
gma-u.5
for
100814141

.
gma-u.5
for
100806067

.
vvi-u.5
for
100265402

.
vvi-u.5
for
100261441

.
vvi-u.5
for
100258668

.
ppo-u.5
for
7467628

.
ppo-u.5
for
18100167

.
mtr-u.5
for
11432951

.
mtr-u.5
for
11422689

.
mtr-u.5
for
11421160

.
osa-u.5
for
4348731

.
osa-u.5
for
4331645

.
osa-u.5
for
4339880

.
zma-u.5
for
100502003

.
zma-u.5
for
pco097024a

.
zma-u.5
for
100278319

.


Ortholog ID: 216
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae ghi ghi bna bna cre cre sbi sbi sot sot cit bdi bdi nta nta
Symbol CIP111 CDC48C LOC100800513 CDC48 LOC101264384 LOC101266255 LOC4348731 LOC4331645 LOC103633408 LOC103637006 LOC103841568 LOC103870514 LOC100261441 LOC100258668 LOC7464706 LOC7484424 LOC25488675 LOC123109893 LOC107919937 LOC107899473 LOC106439184 LOC106452770 CHLRE_06g269950v5 CHLRE_09g401182v5 LOC8067906 LOC8060059 LOC102588443 LOC102597683 LOC102630724 LOC100834048 LOC100821547 LOC107831296 LOC107791620
Function* Cam interacting protein 111 cell division cycle 48C cell division control protein 48 homolog C plamsma membrane-associated AAA-ATPase calmodulin-interacting protein 111-like cell division cycle protein 48 homolog cell division control protein 48 homolog E cell division cycle protein 48 homolog cell division control protein 48 homolog C cell division control protein 48 homolog C calmodulin-interacting protein 111 cell division control protein 48 homolog A cell division control protein 48 homolog C cell division cycle protein 48 homolog cell division control protein 48 homolog C cell division cycle protein 48 homolog cell division control protein 48 homolog C calmodulin-interacting protein 111 calmodulin-interacting protein 111 cell division cycle protein 48 homolog cell division control protein 48 homolog A cell division control protein 48 homolog A uncharacterized protein uncharacterized protein cell division control protein 48 homolog C calmodulin-interacting protein 111 cell division control protein 48 homolog C-like cell division cycle protein 48 homolog cell division cycle protein 48 homolog calmodulin-interacting protein 111 cell division control protein 48 homolog E cell division control protein 48 homolog C cell division cycle protein 48 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 7
ath03040 Spliceosome 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 4
osa01200 Carbon metabolism 3
osa00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 7
bra04141 Protein processing in endoplasmic reticulum 5
bra04144 Endocytosis 4
bra03250 Viral life cycle - HIV-1 3
bra03272 Virion - Hepatitis viruses 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03040 Spliceosome 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 7
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 8
bna03050 Proteasome 4
bna00620 Pyruvate metabolism 3
bna00710 Carbon fixation by Calvin cycle 3
bna01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 8
bna00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 14
cre04141 Protein processing in endoplasmic reticulum 3
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 10
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03018 RNA degradation 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 9
bdi04120 Ubiquitin mediated proteolysis 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 7
nta03008 Ribosome biogenesis in eukaryotes 6
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta03015 mRNA surveillance pathway 3
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824836 821105 100800513 547850 101264384 101266255 4348731 4331645 103633408 103637006 103841568 103870514 100261441 100258668 7464706 7484424 25488675 123109893 107919937 107899473 106439184 106452770 5721861 5723159 8067906 8060059 102588443 102597683 102630724 100834048 100821547 107831296 107791620
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