ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107933568	calmodulin-interacting protein 111
ghi-r.1	107944187	cell division cycle protein 48 homolog
ghi-r.1	107931226	cell division cycle protein 48 homolog
ghi-r.1	107919937	calmodulin-interacting protein 111
ath-u.5	CIP111	Cam interacting protein 111
ath-u.5	CDC48	cell division cycle 48
bra-r.6	103847873	cell division control protein 48 homolog A
bra-r.6	103859279	cell division control protein 48 homolog A
bna-r.1	106387534	cell division control protein 48 homolog C
bna-r.1	106388676	cell division control protein 48 homolog C-like
bna-r.1	106388968	cell division control protein 48 homolog A
cit-r.1	102609758	cell division cycle protein 48 homolog
cit-r.1	102611590	cell division cycle protein 48 homolog
gma-u.5	100799580	cell division cycle protein 48 homolog
gma-u.5	100800513	cell division control protein 48 homolog C
gma-u.5	CDC48	plamsma membrane-associated AAA-ATPase
vvi-u.5	100265402	cell division cycle protein 48 homolog
vvi-u.5	100258668	cell division cycle protein 48 homolog
vvi-u.5	100261441	cell division control protein 48 homolog C
ppo-u.5	18100167	cell division cycle protein 48 homolog
ppo-u.5	7479654	calmodulin-interacting protein 111
mtr-u.5	11422689	calmodulin-interacting protein 111
mtr-u.5	11432951	cell division control protein 48 homolog D
mtr-u.5	25483983	cell division control protein 48 homolog E
sly-u.5	101245092	cell division control protein 48 homolog C
sly-u.5	101246391	cell division cycle protein 48 homolog
sly-u.5	101259229	cell division cycle protein 48 homolog
sot-r.1	102588443	cell division control protein 48 homolog C-like
sot-r.1	102600837	cell division cycle protein 48 homolog
sot-r.1	102584989	cell division cycle protein 48 homolog
nta-r.1	107791620	cell division cycle protein 48 homolog
nta-r.1	107790858	cell division cycle protein 48 homolog
osa-u.5	4331645	cell division cycle protein 48 homolog
osa-u.5	4339880	cell division control protein 48 homolog C
zma-u.5	100279266	uncharacterized LOC100279266
zma-u.5	100278319	uncharacterized LOC100278319
zma-u.5	100279295	Cell division control protein 48 homolog C
tae-r.2	123072171	cell division control protein 48 homolog C
tae-r.2	123049926	cell division control protein 48 homolog E-like
tae-r.2	123053108	cell division control protein 48 homolog E
hvu-r.1	123399795	cell division control protein 48 homolog E-like
hvu-r.1	123413242	calmodulin-interacting protein 111-like
sbi-r.1	8067906	cell division control protein 48 homolog C
sbi-r.1	8073902	cell division control protein 48 homolog E
bdi-r.1	100821246	cell division control protein 48 homolog E
bdi-r.1	100821547	cell division control protein 48 homolog E
cre-r.1	CHLRE_09g401182v5	uncharacterized protein
cre-r.1	CHLRE_06g269950v5	uncharacterized protein
cre-r.1	CHLRE_09g398550v5	uncharacterized protein

Top 50 coexpressed genes to 107933568 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107933568 (ghi-r.1 coexpression data)

CoexMap"107933568"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast	(1647 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(13864 genes)	IEA

GO MF

GO:0016887 [list] [network] ATP hydrolysis activity	(974 genes)	IEA
GO:0005524 [list] [network] ATP binding	(5155 genes)	IEA

Protein

XP_016721305.1 [sequence] [blastp]
XP_016721306.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 2, cysk_nucl 2, nucl_plas 2	(predict for XP_016721305.1)
chlo 4, nucl 1, plas 1, nucl_plas 1, cyto 1, extr 1, E.R. 1, cysk 1, golg_plas 1, mito_plas 1, cyto_E.R. 1	(predict for XP_016721306.1)

Subcellular
localization
TargetP

chlo 6	(predict for XP_016721305.1)
mito 3	(predict for XP_016721306.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107933568	ghi-r.1 for 107944187	ghi-r.1 for 107931226	ghi-r.1 for 107919937	ath-u.5 for CIP111	ath-u.5 for CDC48	bra-r.6 for 103847873	bra-r.6 for 103859279	bna-r.1 for 106387534	bna-r.1 for 106388676	bna-r.1 for 106388968	cit-r.1 for 102609758	cit-r.1 for 102611590	gma-u.5 for 100799580	gma-u.5 for 100800513	gma-u.5 for CDC48	vvi-u.5 for 100265402	vvi-u.5 for 100258668	vvi-u.5 for 100261441	ppo-u.5 for 18100167	ppo-u.5 for 7479654	mtr-u.5 for 11422689	mtr-u.5 for 11432951	mtr-u.5 for 25483983	sly-u.5 for 101245092	sly-u.5 for 101246391	sly-u.5 for 101259229	sot-r.1 for 102588443	sot-r.1 for 102600837	sot-r.1 for 102584989	nta-r.1 for 107791620	nta-r.1 for 107790858	osa-u.5 for 4331645	osa-u.5 for 4339880	zma-u.5 for 100279266	zma-u.5 for 100278319	zma-u.5 for 100279295	tae-r.2 for 123072171	tae-r.2 for 123049926	tae-r.2 for 123053108	hvu-r.1 for 123399795	hvu-r.1 for 123413242	sbi-r.1 for 8067906	sbi-r.1 for 8073902	bdi-r.1 for 100821246	bdi-r.1 for 100821547	cre-r.1 for CHLRE_09g401182v5	cre-r.1 for CHLRE_06g269950v5	cre-r.1 for CHLRE_09g398550v5

Ortholog

Ortholog ID: 216

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

sbi

bdi

cre

Symbol

LOC107931226

LOC107919937

LOC107899473

CIP111

CDC48C

CDC48

Function^*

cell division cycle protein 48 homolog

calmodulin-interacting protein 111

cell division cycle protein 48 homolog

Cam interacting protein 111

cell division cycle 48C

ATPase, AAA-type, CDC48 protein

cell division control protein 48 homolog A

calmodulin-interacting protein 111

cell division control protein 48 homolog A

cell division cycle protein 48 homolog

cell division control protein 48 homolog C

plamsma membrane-associated AAA-ATPase

cell division cycle protein 48 homolog

cell division control protein 48 homolog C

cell division cycle protein 48 homolog

cell division control protein 48 homolog E

cell division control protein 48 homolog C

calmodulin-interacting protein 111-like

cell division cycle protein 48 homolog

cell division control protein 48 homolog C-like

cell division cycle protein 48 homolog

cell division control protein 48 homolog C

cell division cycle protein 48 homolog

cell division control protein 48 homolog E

calmodulin-interacting protein 111

cell division control protein 48 homolog C

cell division control protein 48 homolog E

calmodulin-interacting protein 111

cell division control protein 48 homolog C

cell division control protein 48 homolog E

calmodulin-interacting protein 111

cell division control protein 48 homolog E

calmodulin-interacting protein 111

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	7
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	7
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	7
ath03040	Spliceosome	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	6
ath03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	9
bra04141	Protein processing in endoplasmic reticulum	4
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	7
bra04141	Protein processing in endoplasmic reticulum	5
bra04144	Endocytosis	4
bra03250	Viral life cycle - HIV-1	3
bra03272	Virion - Hepatitis viruses	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	8
bna01200	Carbon metabolism	2
bna01210	2-Oxocarboxylic acid metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	8
bna03050	Proteasome	4
bna00620	Pyruvate metabolism	3
bna00710	Carbon fixation by Calvin cycle	3
bna01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	8
bna00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	10
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	5
gma03050	Proteasome	3
gma00010	Glycolysis / Gluconeogenesis	3
gma00620	Pyruvate metabolism	3
gma00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	5
vvi04120	Ubiquitin mediated proteolysis	2
vvi00020	Citrate cycle (TCA cycle)	2
vvi01200	Carbon metabolism	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	2
vvi03040	Spliceosome	2
vvi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	6
mtr04141	Protein processing in endoplasmic reticulum	6
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot03040	Spliceosome	3
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	6
sot04141	Protein processing in endoplasmic reticulum	3
sot00020	Citrate cycle (TCA cycle)	2
sot00785	Lipoic acid metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4
nta03015	mRNA surveillance pathway	3
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00051	Fructose and mannose metabolism	2
nta00052	Galactose metabolism	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	7
nta03008	Ribosome biogenesis in eukaryotes	6
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	4
osa01200	Carbon metabolism	3
osa00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	5
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	8
sbi04141	Protein processing in endoplasmic reticulum	5
sbi04120	Ubiquitin mediated proteolysis	3
sbi00071	Fatty acid degradation	2
sbi00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	9
bdi04120	Ubiquitin mediated proteolysis	3
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4
bdi03018	RNA degradation	2
bdi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	14
cre04141	Protein processing in endoplasmic reticulum	3
cre04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

107931226

107919937

107899473

824836

821105

831870

103859279

103870514

103841568

106427942

106439184

106452770

102609758

102630724

100800513

547850

100791603

100265402

100258668

100261441

7464706

7484424

25483983

25488675

101264384

101265798

101266255

102588443

102600837

102597683

107791620

107802633

107831296

4331645

4348731

4350096

103637006

103633408

103639569

123109893

8067906

8073902

8060059

100821547

100834048

5723159

5721861

5720210

The preparation time of this page was 0.1 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	3	2	3	3	2	3	3	3	2	2	3	3	2	2	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107933568 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107933568 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**