ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AtCDC48B	ATPase, AAA-type, CDC48 protein
ath-r.7	AtCDC48B	ATPase, AAA-type, CDC48 protein
ath-m.9	AtCDC48B	ATPase, AAA-type, CDC48 protein
ath-e.2	AtCDC48B	ATPase, AAA-type, CDC48 protein
ath-m.4.bio	AtCDC48B	ATPase, AAA-type, CDC48 protein
ath-m.4.hor	AtCDC48B	ATPase, AAA-type, CDC48 protein
ath-m.4.lig	AtCDC48B	ATPase, AAA-type, CDC48 protein
ath-m.4.str	AtCDC48B	ATPase, AAA-type, CDC48 protein
ath-m.4.tis	AtCDC48B	ATPase, AAA-type, CDC48 protein
ath-u.5	CDC48	cell division cycle 48
ath-u.5	CDC48C	cell division cycle 48C
gma-u.5	CDC48	plamsma membrane-associated AAA-ATPase
gma-u.5	100800513	cell division control protein 48 homolog C
gma-u.5	100798680	cell division cycle protein 48 homolog
vvi-u.5	100265402	cell division cycle protein 48 homolog
vvi-u.5	100258668	cell division cycle protein 48 homolog
vvi-u.5	100261441	cell division control protein 48 homolog C
ppo-u.5	18100167	cell division cycle protein 48 homolog
ppo-u.5	7479654	calmodulin-interacting protein 111
mtr-u.5	11422692	calmodulin-interacting protein 111
mtr-u.5	11432951	cell division control protein 48 homolog D
mtr-u.5	25483983	cell division control protein 48 homolog E
sly-u.5	101246391	cell division cycle protein 48 homolog
sly-u.5	101245092	cell division control protein 48 homolog C
sly-u.5	101259229	cell division cycle protein 48 homolog
osa-u.5	4339880	cell division control protein 48 homolog C
osa-u.5	4331645	cell division cycle protein 48 homolog
zma-u.5	103639569	cell division control protein 48 homolog E
zma-u.5	100278319	uncharacterized LOC100278319
zma-u.5	100279295	Cell division control protein 48 homolog C

Top 50 coexpressed genes to AtCDC48B (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AtCDC48B (ath-u.5 coexpression data)

CoexMap"824489"

[Cytoscape]

Annotation

functional annotation

KEGG

ath04141 [list] [network] Protein processing in endoplasmic reticulum (220 genes)

GO BP

GO:0045732 [list] [network] positive regulation of protein catabolic process

(8 genes)

IDA

GO CC

GO:0005654 [list] [network] nucleoplasm	(262 genes)	IDA
GO:0005730 [list] [network] nucleolus	(394 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1198 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	HDA IDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	ISM

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_190891.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, chlo 1, nucl 1, cysk 1, cysk_nucl 1

(predict for NP_190891.1)

Subcellular
localization
TargetP

other 8

(predict for NP_190891.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AtCDC48B	ath-r.7 for AtCDC48B	ath-m.9 for AtCDC48B	ath-e.2 for AtCDC48B	ath-m.4.bio for AtCDC48B	ath-m.4.hor for AtCDC48B	ath-m.4.lig for AtCDC48B	ath-m.4.str for AtCDC48B	ath-m.4.tis for AtCDC48B	ath-u.5 for CDC48	ath-u.5 for CDC48C	gma-u.5 for CDC48	gma-u.5 for 100800513	gma-u.5 for 100798680	vvi-u.5 for 100265402	vvi-u.5 for 100258668	vvi-u.5 for 100261441	ppo-u.5 for 18100167	ppo-u.5 for 7479654	mtr-u.5 for 11422692	mtr-u.5 for 11432951	mtr-u.5 for 25483983	sly-u.5 for 101246391	sly-u.5 for 101245092	sly-u.5 for 101259229	osa-u.5 for 4339880	osa-u.5 for 4331645	zma-u.5 for 103639569	zma-u.5 for 100278319	zma-u.5 for 100279295

Ortholog

Ortholog ID: 216

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

sbi

bdi

cre

Symbol

CIP111

CDC48C

CDC48

Function^*

Cam interacting protein 111

cell division cycle 48C

calmodulin-interacting protein 111

cell division control protein 48 homolog A

calmodulin-interacting protein 111