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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT3G56510   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT3G56510   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT3G56510   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   AT3G56510   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT3G56510   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   AT3G56510   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT3G56510   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT3G56510   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT3G56510   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103841555   pre-rRNA-processing protein ESF2 
 bna-r.1   106367985   pre-rRNA-processing protein ESF2 
 bna-r.1   106368079   pre-rRNA-processing protein ESF2 
 ghi-r.1   107926517   pre-rRNA-processing protein ESF2 
 ghi-r.1   107926354   pre-rRNA-processing protein ESF2 
 cit-r.1   127900427   pre-rRNA-processing protein ESF2-like 
 cit-r.1   102607508   pre-rRNA-processing protein esf2 
 gma-u.5   100798524   pre-rRNA-processing protein ESF2 
 gma-u.5   100782763   pre-rRNA-processing protein ESF2-like 
 vvi-u.5   100259435   pre-rRNA-processing protein ESF2 
 mtr-u.5   11416006   pre-rRNA-processing protein esf2 
 sly-u.5   101268320   pre-rRNA-processing protein ESF2 
 sly-u.5   101251521   pre-rRNA-processing protein ESF2 
 sot-r.1   102579612   pre-rRNA-processing protein esf2-like 
 sot-r.1   102589194   pre-rRNA-processing protein ESF2-like 
 sot-r.1   102591887   pre-rRNA-processing protein ESF2 
 nta-r.1   107794512   pre-rRNA-processing protein ESF2-like 
 nta-r.1   107779934   pre-rRNA-processing protein esf2 
 nta-r.1   107761366   pre-rRNA-processing protein ESF2 
 osa-u.5   4344189   pre-rRNA-processing protein ESF2 
 zma-u.5   100192645   activator of basal transcription 1 
 tae-r.2   123048815   pre-rRNA-processing protein ESF2 
 tae-r.2   123066924   pre-rRNA-processing protein ESF2 
 hvu-r.1   123424845   pre-rRNA-processing protein ESF2-like 
 sbi-r.1   8073146   pre-rRNA-processing protein ESF2 
 bdi-r.1   100846888   pre-rRNA-processing protein ESF2 
 cre-r.1   CHLRE_06g264500v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G56510 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G56510 (ath-m.9 coexpression data)

CoexMap"824818"


athAT3G56510 | Entrez gene ID : 824818      
Species ath bra bna ghi cit gma vvi mtr sly sot nta osa zma tae hvu sbi bdi cre ppo
Paralog 9 1 2 2 2 2 1 1 2 3 3 1 1 2 1 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001030873.1 [sequence] [blastp]
NP_001326046.1 [sequence] [blastp]
NP_001326047.1 [sequence] [blastp]
NP_001326048.1 [sequence] [blastp]
NP_191210.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001030873.1)
nucl 10  (predict for NP_001326046.1)
nucl 10  (predict for NP_001326047.1)
nucl 10  (predict for NP_001326048.1)
nucl 10  (predict for NP_191210.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001030873.1)
other 9  (predict for NP_001326046.1)
other 9  (predict for NP_001326047.1)
other 9  (predict for NP_001326048.1)
other 9  (predict for NP_191210.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT3G56510
ath-u.5
for
AT3G56510
ath-r.7
for
AT3G56510
ath-e.2
for
AT3G56510
ath-m.4.bio
for
AT3G56510
ath-m.4.hor
for
AT3G56510
ath-m.4.lig
for
AT3G56510
ath-m.4.str
for
AT3G56510
ath-m.4.tis
for
AT3G56510
bra-r.6
for
103841555
bna-r.1
for
106367985
bna-r.1
for
106368079
ghi-r.1
for
107926517
ghi-r.1
for
107926354
cit-r.1
for
127900427
cit-r.1
for
102607508
gma-u.5
for
100798524
gma-u.5
for
100782763
vvi-u.5
for
100259435
mtr-u.5
for
11416006
sly-u.5
for
101268320
sly-u.5
for
101251521
sot-r.1
for
102579612
sot-r.1
for
102589194
sot-r.1
for
102591887
nta-r.1
for
107794512
nta-r.1
for
107779934
nta-r.1
for
107761366
osa-u.5
for
4344189
zma-u.5
for
100192645
tae-r.2
for
123048815
tae-r.2
for
123066924
hvu-r.1
for
123424845
sbi-r.1
for
8073146
bdi-r.1
for
100846888
cre-r.1
for
CHLRE_06g264500v5


Ortholog ID: 6291
Species ath bra bna bna ghi ghi cit cit gma gma vvi mtr sly sly sot sot sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT3G56510 LOC103841555 LOC106367985 LOC106368079 LOC107926517 LOC107926354 LOC127900427 LOC102607508 LOC100798524 LOC100782763 LOC100259435 LOC11416006 LOC101268320 LOC101251521 LOC102579612 LOC102589194 LOC102591887 LOC107794512 LOC107779934 LOC107771807 LOC4344189 LOC100192645 LOC123048815 LOC123066924 LOC123182959 LOC123424845 LOC8073146 LOC100846888 CHLRE_06g264500v5
Function* RNA-binding (RRM/RBD/RNP motifs) family protein pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2-like pre-rRNA-processing protein esf2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2-like pre-rRNA-processing protein ESF2 pre-rRNA-processing protein esf2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein esf2-like pre-rRNA-processing protein ESF2-like pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2-like pre-rRNA-processing protein esf2 pre-rRNA-processing protein esf2 pre-rRNA-processing protein ESF2 activator of basal transcription 1 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein esf2 pre-rRNA-processing protein ESF2-like pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01210 2-Oxocarboxylic acid metabolism 2
hvu01230 Biosynthesis of amino acids 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824818 103841555 106367985 106368079 107926517 107926354 127900427 102607508 100798524 100782763 100259435 11416006 101268320 101251521 102579612 102589194 102591887 107794512 107779934 107771807 4344189 100192645 123048815 123066924 123182959 123424845 8073146 100846888 5721974
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