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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SPT16   global transcription factor C 
 ath-u.5   SPT16   global transcription factor C 
 ath-r.7   SPT16   global transcription factor C 
 ath-e.2   SPT16   global transcription factor C 
 ath-m.4.bio   SPT16   global transcription factor C 
 ath-m.4.hor   SPT16   global transcription factor C 
 ath-m.4.lig   SPT16   global transcription factor C 
 ath-m.4.str   SPT16   global transcription factor C 
 ath-m.4.tis   SPT16   global transcription factor C 
 bra-r.6   103858574   FACT complex subunit SPT16 
 bra-r.6   103833934   FACT complex subunit SPT16 
 bna-r.1   106438813   FACT complex subunit SPT16 
 bna-r.1   125578349   FACT complex subunit SPT16-like 
 bna-r.1   106388535   FACT complex subunit SPT16 
 ghi-r.1   107893503   FACT complex subunit SPT16 
 ghi-r.1   107893502   FACT complex subunit SPT16 
 ghi-r.1   107888357   FACT complex subunit SPT16 
 cit-r.1   102607456   FACT complex subunit SPT16-like 
 cit-r.1   102607954   FACT complex subunit SPT16 
 gma-u.5   100793201   FACT complex subunit SPT16 
 gma-u.5   100792677   FACT complex subunit SPT16 
 gma-u.5   100819092   FACT complex subunit SPT16 
 vvi-u.5   100263194   FACT complex subunit SPT16 
 vvi-u.5   100263158   FACT complex subunit SPT16 
 ppo-u.5   18098491   FACT complex subunit SPT16-like 
 ppo-u.5   7465222   FACT complex subunit SPT16 
 ppo-u.5   7478879   FACT complex subunit SPT16 
 mtr-u.5   11406725   FACT complex subunit SPT16 
 mtr-u.5   11429385   FACT complex subunit SPT16 
 sly-u.5   101261165   FACT complex subunit SPT16-like 
 sly-u.5   101247071   FACT complex subunit SPT16-like 
 sly-u.5   101260671   FACT complex subunit SPT16-like 
 sot-r.1   102589152   FACT complex subunit SPT16-like 
 sot-r.1   102588201   FACT complex subunit SPT16-like 
 sot-r.1   102589701   FACT complex subunit SPT16-like 
 nta-r.1   107764722   FACT complex subunit SPT16-like 
 nta-r.1   107759376   FACT complex subunit SPT16-like 
 nta-r.1   107778560   FACT complex subunit SPT16-like 
 osa-u.5   4352155   FACT complex subunit SPT16-like 
 osa-u.5   4335478   FACT complex subunit SPT16-like 
 zma-u.5   542546   global transcription factor C (Spt16) 
 tae-r.2   123187247   FACT complex subunit SPT16 
 tae-r.2   123043422   FACT complex subunit SPT16 
 tae-r.2   123051295   FACT complex subunit SPT16 
 hvu-r.1   123424502   FACT complex subunit SPT16 
 sbi-r.1   8080203   FACT complex subunit SPT16 
 bdi-r.1   100844232   FACT complex subunit SPT16 
 bdi-r.1   100830242   FACT complex subunit SPT16 
 cre-r.1   CHLRE_12g540076v5   uncharacterized protein 

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Top 50 coexpressed genes to SPT16 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SPT16 (ath-m.9 coexpression data)

CoexMap"826665"


athSPT16 | Entrez gene ID : 826665      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 2 3 2 3 2 3 3 3 2 1 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO CC
GO:0035101 [list] [network] FACT complex  (2 genes)  IDA  
GO:0000791 [list] [network] euchromatin  (13 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
Protein NP_001329034.1 [sequence] [blastp]
NP_001329035.1 [sequence] [blastp]
NP_192809.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  chlo 1,  nucl_plas 1  (predict for NP_001329034.1)
nucl 9  (predict for NP_001329035.1)
cyto 5,  nucl 3,  chlo 1,  nucl_plas 1  (predict for NP_192809.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001329034.1)
other 6  (predict for NP_001329035.1)
other 6  (predict for NP_192809.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SPT16
ath-u.5
for
SPT16
ath-r.7
for
SPT16
ath-e.2
for
SPT16
ath-m.4.bio
for
SPT16
ath-m.4.hor
for
SPT16
ath-m.4.lig
for
SPT16
ath-m.4.str
for
SPT16
ath-m.4.tis
for
SPT16
bra-r.6
for
103858574
bra-r.6
for
103833934
bna-r.1
for
106438813
bna-r.1
for
125578349
bna-r.1
for
106388535
ghi-r.1
for
107893503
ghi-r.1
for
107893502
ghi-r.1
for
107888357
cit-r.1
for
102607456
cit-r.1
for
102607954
gma-u.5
for
100793201
gma-u.5
for
100792677
gma-u.5
for
100819092
vvi-u.5
for
100263194
vvi-u.5
for
100263158
ppo-u.5
for
18098491
ppo-u.5
for
7465222
ppo-u.5
for
7478879
mtr-u.5
for
11406725
mtr-u.5
for
11429385
sly-u.5
for
101261165
sly-u.5
for
101247071
sly-u.5
for
101260671
sot-r.1
for
102589152
sot-r.1
for
102588201
sot-r.1
for
102589701
nta-r.1
for
107764722
nta-r.1
for
107759376
nta-r.1
for
107778560
osa-u.5
for
4352155
osa-u.5
for
4335478
zma-u.5
for
542546
tae-r.2
for
123187247
tae-r.2
for
123043422
tae-r.2
for
123051295
hvu-r.1
for
123424502
sbi-r.1
for
8080203
bdi-r.1
for
100844232
bdi-r.1
for
100830242
cre-r.1
for
CHLRE_12g540076v5


Ortholog ID: 3119
Species ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma tae tae tae hvu sbi bdi bdi cre
Symbol SPT16 LOC103858574 LOC103833934 LOC106438813 LOC125578349 LOC106388535 LOC107888356 LOC107927240 LOC107886465 LOC102607456 LOC102607954 LOC100793201 LOC100792677 LOC100785245 LOC100263194 LOC100263158 LOC18098491 LOC7465222 LOC18098490 LOC11406725 LOC11429385 LOC101261165 LOC101247071 LOC101260671 LOC102589152 LOC102588201 LOC102589701 LOC107759376 LOC107778560 LOC107778562 LOC4352155 LOC4335478 LOC542546 LOC123187247 LOC123043422 LOC123051295 LOC123424502 LOC8080203 LOC100844232 LOC100830242 CHLRE_12g540076v5
Function* global transcription factor C FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16-like FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16-like FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16-like FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like global transcription factor C (Spt16) FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 3
bna05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 5
gma04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
ppo00220 Arginine biosynthesis 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae00310 Lysine degradation 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03018 RNA degradation 3
tae04120 Ubiquitin mediated proteolysis 3
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 4
hvu04120 Ubiquitin mediated proteolysis 2
hvu03013 Nucleocytoplasmic transport 2
hvu04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 6
cre03013 Nucleocytoplasmic transport 2
cre03040 Spliceosome 2
cre03082 ATP-dependent chromatin remodeling 2
cre03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826665 103858574 103833934 106438813 125578349 106388535 107888356 107927240 107886465 102607456 102607954 100793201 100792677 100785245 100263194 100263158 18098491 7465222 18098490 11406725 11429385 101261165 101247071 101260671 102589152 102588201 102589701 107759376 107778560 107778562 4352155 4335478 542546 123187247 123043422 123051295 123424502 8080203 100844232 100830242 5728600
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