ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	125578349	FACT complex subunit SPT16-like
ath-u.5	SPT16	global transcription factor C
gma-u.5	100792677	FACT complex subunit SPT16
gma-u.5	100793201	FACT complex subunit SPT16
gma-u.5	100819092	FACT complex subunit SPT16
vvi-u.5	100263158	FACT complex subunit SPT16
vvi-u.5	100263194	FACT complex subunit SPT16
ppo-u.5	18098491	FACT complex subunit SPT16-like
ppo-u.5	7465222	FACT complex subunit SPT16
ppo-u.5	7478879	FACT complex subunit SPT16
mtr-u.5	11406725	FACT complex subunit SPT16
mtr-u.5	11429385	FACT complex subunit SPT16
sly-u.5	101261165	FACT complex subunit SPT16-like
sly-u.5	101247071	FACT complex subunit SPT16-like
sly-u.5	101260671	FACT complex subunit SPT16-like
osa-u.5	4352155	FACT complex subunit SPT16-like
osa-u.5	4335478	FACT complex subunit SPT16-like
zma-u.5	542546	global transcription factor C (Spt16)

Annotation

functional annotation

KEGG

GO BP

GO:0006368 [list] [network] transcription elongation by RNA polymerase II	(46 genes)	IEA
GO:0032968 [list] [network] positive regulation of transcription elongation by RNA polymerase II	(88 genes)	IEA

GO CC

GO:0035101 [list] [network] FACT complex

(9 genes)

IEA

GO MF

GO:0031491 [list] [network] nucleosome binding

(74 genes)

IEA

Protein

XP_048596806.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 2, pero 2

(predict for XP_048596806.1)

Subcellular
localization
TargetP

other 7

(predict for XP_048596806.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125578349	ath-u.5 for SPT16	gma-u.5 for 100792677	gma-u.5 for 100793201	gma-u.5 for 100819092	vvi-u.5 for 100263158	vvi-u.5 for 100263194	ppo-u.5 for 18098491	ppo-u.5 for 7465222	ppo-u.5 for 7478879	mtr-u.5 for 11406725	mtr-u.5 for 11429385	sly-u.5 for 101261165	sly-u.5 for 101247071	sly-u.5 for 101260671	osa-u.5 for 4352155	osa-u.5 for 4335478	zma-u.5 for 542546

Ortholog

Ortholog ID: 3119

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SPT16

Function^*

FACT complex subunit SPT16

FACT complex subunit SPT16-like

FACT complex subunit SPT16

global transcription factor C

FACT complex subunit SPT16

FACT complex subunit SPT16-like

FACT complex subunit SPT16

FACT complex subunit SPT16-like

global transcription factor C (Spt16)

FACT complex subunit SPT16

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	5
bna03420	Nucleotide excision repair	2
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	3
bna05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	5
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	5
gma04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	3
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2
ppo04016	MAPK signaling pathway - plant	2
ppo04075	Plant hormone signal transduction	2
ppo00220	Arginine biosynthesis	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03420	Nucleotide excision repair	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	11
sly03420	Nucleotide excision repair	2
sly03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03082	ATP-dependent chromatin remodeling	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03018	RNA degradation	3
tae04120	Ubiquitin mediated proteolysis	3
tae03022	Basal transcription factors	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	7
tae00310	Lysine degradation	3
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	4
hvu04120	Ubiquitin mediated proteolysis	2
hvu03013	Nucleocytoplasmic transport	2
hvu04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	6
sbi00970	Aminoacyl-tRNA biosynthesis	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	6
cre03013	Nucleocytoplasmic transport	2
cre03040	Spliceosome	2
cre03082	ATP-dependent chromatin remodeling	2
cre03083	Polycomb repressive complex	2

Expression

Expression pattern

Entrez Gene ID^*

106388535

125578349

103833934

103858574

826665

107886465

107927240

102607954

102607456

100785245

100792677

100263194

100263158

7465222

18098490

11429385

11406725

101247071

101261165

102589701

102588201

107778560

107778562

4335478

4352155

542546

123051295

123187247

123424502

8080203

100830242

100844232

5728600

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 125578349 (bna-r.1 coexpression data)

Top 50 enrichment test to 125578349 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	3	2	3	2	3	2	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 125578349 (bna-r.1 coexpression data)

Top 50 enrichment test to 125578349 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**