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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT4G14300   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT4G14300   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT4G14300   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   AT4G14300   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT4G14300   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   AT4G14300   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT4G14300   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT4G14300   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT4G14300   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT2G33410   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103835199   heterogeneous nuclear ribonucleoprotein 1 
 bra-r.6   103857488   heterogeneous nuclear ribonucleoprotein 1 
 bra-r.6   103865267   heterogeneous nuclear ribonucleoprotein 1 
 bna-r.1   111213586   heterogeneous nuclear ribonucleoprotein 1 
 bna-r.1   106451155   heterogeneous nuclear ribonucleoprotein 1 
 bna-r.1   125608280   heterogeneous nuclear ribonucleoprotein 1-like 
 ghi-r.1   107944246   heterogeneous nuclear ribonucleoprotein 1 
 ghi-r.1   121203007   heterogeneous nuclear ribonucleoprotein 1 
 ghi-r.1   121215240   heterogeneous nuclear ribonucleoprotein 1 
 cit-r.1   102607686   heterogeneous nuclear ribonucleoprotein 1 
 cit-r.1   102622156   heterogeneous nuclear ribonucleoprotein 1-like 
 gma-u.5   100786882   heterogeneous nuclear ribonucleoprotein 1 
 gma-u.5   100811267   heterogeneous nuclear ribonucleoprotein 1 
 vvi-u.5   100263471   heterogeneous nuclear ribonucleoprotein 1 
 vvi-u.5   100257917   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   7461497   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   7494747   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   7455708   heterogeneous nuclear ribonucleoprotein 1 
 mtr-u.5   25484388   heterogeneous nuclear ribonucleoprotein 1 
 sly-u.5   101260765   heterogeneous nuclear ribonucleoprotein 1 
 sly-u.5   101264892   heterogeneous nuclear ribonucleoprotein 1-like 
 sot-r.1   102601968   heterogeneous nuclear ribonucleoprotein 1-like 
 sot-r.1   102604539   heterogeneous nuclear ribonucleoprotein 1 
 nta-r.1   107814059   heterogeneous nuclear ribonucleoprotein 1 
 osa-u.5   4348867   heterogeneous nuclear ribonucleoprotein 1 
 zma-u.5   100280293   uncharacterized LOC100280293 
 zma-u.5   100382683   uncharacterized LOC100382683 
 tae-r.2   123181003   heterogeneous nuclear ribonucleoprotein 1 
 tae-r.2   123045132   heterogeneous nuclear ribonucleoprotein 1 
 tae-r.2   123120817   heterogeneous nuclear ribonucleoprotein 1 
 hvu-r.1   123430641   heterogeneous nuclear ribonucleoprotein 1-like 
 sbi-r.1   110436984   heterogeneous nuclear ribonucleoprotein 1-like 
 bdi-r.1   100832671   heterogeneous nuclear ribonucleoprotein 1 

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Top 50 coexpressed genes to AT4G14300 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G14300 (ath-m.9 coexpression data)

CoexMap"827071"


athAT4G14300 | Entrez gene ID : 827071      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 2 2 2 3 1 2 2 1 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO:2000070 [list] [network] regulation of response to water deprivation  (43 genes)  IMP  
GO:1901000 [list] [network] regulation of response to salt stress  (44 genes)  IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  IDA RCA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_001328758.1 [sequence] [blastp]
NP_193166.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001328758.1)
nucl 10  (predict for NP_193166.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001328758.1)
other 9  (predict for NP_193166.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT4G14300
ath-u.5
for
AT4G14300
ath-r.7
for
AT4G14300
ath-e.2
for
AT4G14300
ath-m.4.bio
for
AT4G14300
ath-m.4.hor
for
AT4G14300
ath-m.4.lig
for
AT4G14300
ath-m.4.str
for
AT4G14300
ath-m.4.tis
for
AT4G14300
ath-u.5
for
AT2G33410
bra-r.6
for
103835199
bra-r.6
for
103857488
bra-r.6
for
103865267
bna-r.1
for
111213586
bna-r.1
for
106451155
bna-r.1
for
125608280
ghi-r.1
for
107944246
ghi-r.1
for
121203007
ghi-r.1
for
121215240
cit-r.1
for
102607686
cit-r.1
for
102622156
gma-u.5
for
100786882
gma-u.5
for
100811267
vvi-u.5
for
100263471
vvi-u.5
for
100257917
ppo-u.5
for
7461497
ppo-u.5
for
7494747
ppo-u.5
for
7455708
mtr-u.5
for
25484388
sly-u.5
for
101260765
sly-u.5
for
101264892
sot-r.1
for
102601968
sot-r.1
for
102604539
nta-r.1
for
107814059
osa-u.5
for
4348867
zma-u.5
for
100280293
zma-u.5
for
100382683
tae-r.2
for
123181003
tae-r.2
for
123045132
tae-r.2
for
123120817
hvu-r.1
for
123430641
sbi-r.1
for
110436984
bdi-r.1
for
100832671


Ortholog ID: 4692
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo ppo mtr sly sly sot sot nta osa zma zma tae tae tae hvu sbi bdi
Symbol AT4G14300 AT2G33410 LOC103835199 LOC103857488 LOC103865267 LOC111213586 LOC106439718 LOC106388035 LOC107944246 LOC121203007 LOC121215240 LOC102607686 LOC102622156 LOC100786882 LOC100811267 LOC100263471 LOC100257917 LOC7461497 LOC7494747 LOC18102461 LOC25484388 LOC101260765 LOC101264892 LOC102601968 LOC102604539 LOC107814059 LOC4348867 LOC100280293 LOC100382683 LOC123181003 LOC123045132 LOC123120817 LOC123430641 LOC110436984 LOC100832671
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 uncharacterized LOC100280293 uncharacterized LOC100382683 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
ath03083 Polycomb repressive complex 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 5
bra04517 IgSF CAM signaling 5
bra04814 Motor proteins 5
bra00970 Aminoacyl-tRNA biosynthesis 3
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 10
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 10
bna03040 Spliceosome 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00240 Pyrimidine metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 8
gma03040 Spliceosome 8
gma03250 Viral life cycle - HIV-1 3
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 9
gma03015 mRNA surveillance pathway 5
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo03010 Ribosome 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03015 mRNA surveillance pathway 4
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
sly03015 mRNA surveillance pathway 3
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 10
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 4
zma04144 Endocytosis 4
zma05100 Bacterial invasion of epithelial cells 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03040 Spliceosome 5
tae03013 Nucleocytoplasmic transport 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 5
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03013 Nucleocytoplasmic transport 4
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827071 817905 103835199 103857488 103865267 111213586 106439718 106388035 107944246 121203007 121215240 102607686 102622156 100786882 100811267 100263471 100257917 7461497 7494747 18102461 25484388 101260765 101264892 102601968 102604539 107814059 4348867 100280293 100382683 123181003 123045132 123120817 123430641 110436984 100832671
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