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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   CLPR4   CLP protease R subunit 4 
 ath-u.5   CLPR4   CLP protease R subunit 4 
 ath-r.7   CLPR4   CLP protease R subunit 4 
 ath-e.2   CLPR4   CLP protease R subunit 4 
 ath-m.4.bio   CLPR4   CLP protease R subunit 4 
 ath-m.4.hor   CLPR4   CLP protease R subunit 4 
 ath-m.4.lig   CLPR4   CLP protease R subunit 4 
 ath-m.4.str   CLPR4   CLP protease R subunit 4 
 ath-m.4.tis   CLPR4   CLP protease R subunit 4 
 bra-r.6   103868942   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 bra-r.6   103860891   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 bna-r.1   106440142   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 bna-r.1   106440262   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like 
 bna-r.1   106375887   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 ghi-r.1   107915418   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like 
 ghi-r.1   107950095   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 ghi-r.1   107946693   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 cit-r.1   102629735   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like 
 cit-r.1   102627265   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 gma-u.5   100785827   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like 
 gma-u.5   100780029   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 vvi-u.5   100855178   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 ppo-u.5   18096891   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 mtr-u.5   25493594   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 sly-u.5   101247052   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 sot-r.1   102591717   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 nta-r.1   107831804   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 nta-r.1   107790385   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 osa-u.5   4325168   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 zma-u.5   100272400   uncharacterized LOC100272400 
 tae-r.2   123078165   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 tae-r.2   123069679   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 tae-r.2   123061092   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 hvu-r.1   123443508   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 sbi-r.1   8074526   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 bdi-r.1   100842227   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 cre-r.1   CHLRE_03g204350v5   uncharacterized protein 

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Top 50 coexpressed genes to CLPR4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CLPR4 (ath-m.9 coexpression data)

CoexMap"827412"


athCLPR4 | Entrez gene ID : 827412      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 2 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000302 [list] [network] response to reactive oxygen species  (142 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009532 [list] [network] plastid stroma  (704 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_567521.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 5,  chlo_mito 5  (predict for NP_567521.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_567521.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
CLPR4
ath-u.5
for
CLPR4
ath-r.7
for
CLPR4
ath-e.2
for
CLPR4
ath-m.4.bio
for
CLPR4
ath-m.4.hor
for
CLPR4
ath-m.4.lig
for
CLPR4
ath-m.4.str
for
CLPR4
ath-m.4.tis
for
CLPR4
bra-r.6
for
103868942
bra-r.6
for
103860891
bna-r.1
for
106440142
bna-r.1
for
106440262
bna-r.1
for
106375887
ghi-r.1
for
107915418
ghi-r.1
for
107950095
ghi-r.1
for
107946693
cit-r.1
for
102629735
cit-r.1
for
102627265
gma-u.5
for
100785827
gma-u.5
for
100780029
vvi-u.5
for
100855178
ppo-u.5
for
18096891
mtr-u.5
for
25493594
sly-u.5
for
101247052
sot-r.1
for
102591717
nta-r.1
for
107831804
nta-r.1
for
107790385
osa-u.5
for
4325168
zma-u.5
for
100272400
tae-r.2
for
123078165
tae-r.2
for
123069679
tae-r.2
for
123061092
hvu-r.1
for
123443508
sbi-r.1
for
8074526
bdi-r.1
for
100842227
cre-r.1
for
CHLRE_03g204350v5


Ortholog ID: 7277
Species ath bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol CLPR4 LOC103868942 LOC103860891 LOC106440142 LOC106440262 LOC106425454 LOC107915418 LOC107950095 LOC107939884 LOC102629735 LOC102627265 LOC100785827 LOC100780029 LOC100855178 LOC18096891 LOC25493594 LOC101247052 LOC102591717 LOC107831804 LOC107790385 LOC4325168 LOC100272400 LOC123078165 LOC123069679 LOC123061092 LOC123443508 LOC8074526 LOC100842227 CHLRE_03g204350v5
Function* CLP protease R subunit 4 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic uncharacterized LOC100272400 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 2
ath00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 5
bna00740 Riboflavin metabolism 3
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 4
bna03060 Protein export 2
bna00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 4
bna00230 Purine metabolism 2
bna00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 5
gma00450 Selenocompound metabolism 4
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 3
nta00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827412 103868942 103860891 106440142 106440262 106425454 107915418 107950095 107939884 102629735 102627265 100785827 100780029 100855178 18096891 25493594 101247052 102591717 107831804 107790385 4325168 100272400 123078165 123069679 123061092 123443508 8074526 100842227 5718870
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