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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   MSH6   MUTS homolog 6 
 ath-u.5   MSH6   MUTS homolog 6 
 ath-r.7   MSH6   MUTS homolog 6 
 ath-e.2   MSH6   MUTS homolog 6 
 ath-m.4.bio   MSH6   MUTS homolog 6 
 ath-m.4.hor   MSH6   MUTS homolog 6 
 ath-m.4.lig   MSH6   MUTS homolog 6 
 ath-m.4.str   MSH6   MUTS homolog 6 
 ath-m.4.tis   MSH6   MUTS homolog 6 
 bra-r.6   103858779   DNA mismatch repair protein MSH6 
 bna-r.1   106426511   DNA mismatch repair protein MSH6 
 bna-r.1   125606942   DNA mismatch repair protein MSH6 
 ghi-r.1   107954361   DNA mismatch repair protein MSH6 
 ghi-r.1   107909991   DNA mismatch repair protein MSH6 
 cit-r.1   102627728   DNA mismatch repair protein MSH6 
 gma-u.5   100811104   DNA mismatch repair protein MSH6 
 vvi-u.5   100255608   DNA mismatch repair protein MSH6 
 ppo-u.5   112326168   DNA mismatch repair protein MSH6 
 mtr-u.5   11432526   DNA mismatch repair protein MSH6 
 sly-u.5   112941390   DNA mismatch repair protein MSH6 
 sot-r.1   102602160   DNA mismatch repair protein MSH6 
 nta-r.1   107825338   DNA mismatch repair protein MSH6 
 nta-r.1   107805046   DNA mismatch repair protein MSH6 
 osa-u.5   4347016   DNA mismatch repair protein MSH6 
 zma-u.5   542626   mismatch binding protein Mus3 
 tae-r.2   123121484   DNA mismatch repair protein MSH6 
 tae-r.2   542977   DNA mismatch repair protein MSH6 
 tae-r.2   123103708   DNA mismatch repair protein MSH6 
 hvu-r.1   123396435   DNA mismatch repair protein MSH6 
 sbi-r.1   8055803   DNA mismatch repair protein MSH6 
 bdi-r.1   100821236   DNA mismatch repair protein MSH6 
 cre-r.1   CHLRE_05g235750v5   uncharacterized protein 

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Top 50 coexpressed genes to MSH6 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to MSH6 (ath-m.9 coexpression data)

CoexMap"828147"


athMSH6 | Entrez gene ID : 828147      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03430 [list] [network] Mismatch repair (32 genes)
GO BP
GO:0006290 [list] [network] pyrimidine dimer repair  (8 genes)  IMP  
GO:0006298 [list] [network] mismatch repair  (12 genes)  IEA ISS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (10 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190656.1 [sequence] [blastp]
NP_192116.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  chlo_mito 4,  mito 2,  nucl 1,  plas 1,  cysk 1,  cyto_nucl 1,  cysk_plas 1  (predict for NP_001190656.1)
chlo 4,  chlo_mito 4,  mito 2,  nucl 1,  plas 1,  cysk 1,  cyto_nucl 1,  cysk_plas 1  (predict for NP_192116.1)
Subcellular
localization
TargetP
chlo 7,  mito 4  (predict for NP_001190656.1)
chlo 7,  mito 4  (predict for NP_192116.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
MSH6
ath-u.5
for
MSH6
ath-r.7
for
MSH6
ath-e.2
for
MSH6
ath-m.4.bio
for
MSH6
ath-m.4.hor
for
MSH6
ath-m.4.lig
for
MSH6
ath-m.4.str
for
MSH6
ath-m.4.tis
for
MSH6
bra-r.6
for
103858779
bna-r.1
for
106426511
bna-r.1
for
125606942
ghi-r.1
for
107954361
ghi-r.1
for
107909991
cit-r.1
for
102627728
gma-u.5
for
100811104
vvi-u.5
for
100255608
ppo-u.5
for
112326168
mtr-u.5
for
11432526
sly-u.5
for
112941390
sot-r.1
for
102602160
nta-r.1
for
107825338
nta-r.1
for
107805046
osa-u.5
for
4347016
zma-u.5
for
542626
tae-r.2
for
123121484
tae-r.2
for
542977
tae-r.2
for
123103708
hvu-r.1
for
123396435
sbi-r.1
for
8055803
bdi-r.1
for
100821236
cre-r.1
for
CHLRE_05g235750v5


Ortholog ID: 10207
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol MSH6 LOC103858779 LOC106426511 LOC125606942 LOC107954361 LOC107909991 LOC102627728 LOC100811104 LOC100255608 LOC112326168 LOC11432526 LOC112941390 LOC102602160 LOC107825338 LOC107805046 LOC4347016 LOC542626 LOC123121484 LOC542977 LOC123103708 LOC123396435 LOC8055803 LOC100821236 CHLRE_05g235750v5
Function* MUTS homolog 6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 mismatch binding protein Mus3 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03430 Mismatch repair 4
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 4
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03430 Mismatch repair 5
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03430 Mismatch repair 7
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
bna03030 DNA replication 2
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 6
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 6
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 7
gma03430 Mismatch repair 4
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03430 Mismatch repair 3
ppo03030 DNA replication 3
ppo03460 Fanconi anemia pathway 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 10
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 4
sot03430 Mismatch repair 3
sot03440 Homologous recombination 3
sot03460 Fanconi anemia pathway 2
sot03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 3
zma03018 RNA degradation 3
zma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 8
tae03030 DNA replication 7
tae03440 Homologous recombination 6
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae03430 Mismatch repair 9
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae03440 Homologous recombination 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae03430 Mismatch repair 9
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae03440 Homologous recombination 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03430 Mismatch repair 2
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 9
cre03410 Base excision repair 5
cre03420 Nucleotide excision repair 5
cre03430 Mismatch repair 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828147 103858779 106426511 125606942 107954361 107909991 102627728 100811104 100255608 112326168 11432526 112941390 102602160 107825338 107805046 4347016 542626 123121484 542977 123103708 123396435 8055803 100821236 5723369
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