Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   MSH6   MUTS homolog 6 
 ath-r.7   MSH6   MUTS homolog 6 
 ath-m.9   MSH6   MUTS homolog 6 
 ath-e.2   MSH6   MUTS homolog 6 
 ath-m.4.bio   MSH6   MUTS homolog 6 
 ath-m.4.hor   MSH6   MUTS homolog 6 
 ath-m.4.lig   MSH6   MUTS homolog 6 
 ath-m.4.str   MSH6   MUTS homolog 6 
 ath-m.4.tis   MSH6   MUTS homolog 6 
 gma-u.5   100811104   DNA mismatch repair protein MSH6 
 vvi-u.5   100255608   DNA mismatch repair protein MSH6 
 ppo-u.5   112326168   DNA mismatch repair protein MSH6 
 mtr-u.5   11432526   DNA mismatch repair protein MSH6 
 sly-u.5   112941390   DNA mismatch repair protein MSH6 
 osa-u.5   4347016   DNA mismatch repair protein MSH6 
 zma-u.5   542626   mismatch binding protein Mus3 

close


Top 50 coexpressed genes to MSH6 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to MSH6 (ath-u.5 coexpression data)

CoexMap"828147"


athMSH6 | Entrez gene ID : 828147      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03430 [list] [network] Mismatch repair (32 genes)
GO BP
GO:0006290 [list] [network] pyrimidine dimer repair  (8 genes)  IMP  
GO:0006298 [list] [network] mismatch repair  (12 genes)  IEA ISS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (10 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190656.1 [sequence] [blastp]
NP_192116.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  chlo_mito 4,  mito 2,  nucl 1,  plas 1,  cysk 1,  cyto_nucl 1,  cysk_plas 1  (predict for NP_001190656.1)
chlo 4,  chlo_mito 4,  mito 2,  nucl 1,  plas 1,  cysk 1,  cyto_nucl 1,  cysk_plas 1  (predict for NP_192116.1)
Subcellular
localization
TargetP
chlo 7,  mito 4  (predict for NP_001190656.1)
chlo 7,  mito 4  (predict for NP_192116.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
MSH6

.
ath-r.7
for
MSH6

.
ath-m.9
for
MSH6

.
ath-e.2
for
MSH6

.
ath-m.4.bio
for
MSH6

.
ath-m.4.hor
for
MSH6

.
ath-m.4.lig
for
MSH6

.
ath-m.4.str
for
MSH6

.
ath-m.4.tis
for
MSH6

.
gma-u.5
for
100811104

.
vvi-u.5
for
100255608

.
ppo-u.5
for
112326168

.
mtr-u.5
for
11432526

.
sly-u.5
for
112941390

.
osa-u.5
for
4347016

.
zma-u.5
for
542626

.


Ortholog ID: 10207
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol MSH6 LOC100811104 LOC112941390 LOC4347016 LOC542626 LOC103858779 LOC100255608 LOC112326168 LOC11432526 LOC542977 LOC123121484 LOC123396435 LOC107909991 LOC107954361 LOC125606942 LOC106426511 CHLRE_05g235750v5 LOC8055803 LOC102602160 LOC102627728 LOC100821236 LOC107805046 LOC107825338
Function* MUTS homolog 6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 mismatch binding protein Mus3 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 uncharacterized protein DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6 DNA mismatch repair protein MSH6
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03430 Mismatch repair 4
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 7
gma03430 Mismatch repair 4
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 3
zma03018 RNA degradation 3
zma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 4
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03430 Mismatch repair 3
ppo03030 DNA replication 3
ppo03460 Fanconi anemia pathway 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 10
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae03430 Mismatch repair 9
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae03440 Homologous recombination 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 8
tae03030 DNA replication 7
tae03440 Homologous recombination 6
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03430 Mismatch repair 2
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 6
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 6
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03430 Mismatch repair 7
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
bna03030 DNA replication 2
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03430 Mismatch repair 5
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 9
cre03410 Base excision repair 5
cre03420 Nucleotide excision repair 5
cre03430 Mismatch repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 4
sot03430 Mismatch repair 3
sot03440 Homologous recombination 3
sot03460 Fanconi anemia pathway 2
sot03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
nta03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828147 100811104 112941390 4347016 542626 103858779 100255608 112326168 11432526 542977 123121484 123396435 107909991 107954361 125606942 106426511 5723369 8055803 102602160 102627728 100821236 107805046 107825338
The preparation time of this page was 1.4 [sec].