ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT4G22360	SWIB complex BAF60b domain-containing protein
ath-u.5	AT4G22360	SWIB complex BAF60b domain-containing protein
ath-r.7	AT4G22360	SWIB complex BAF60b domain-containing protein
ath-e.2	AT4G22360	SWIB complex BAF60b domain-containing protein
ath-m.4.bio	AT4G22360	SWIB complex BAF60b domain-containing protein
ath-m.4.hor	AT4G22360	SWIB complex BAF60b domain-containing protein
ath-m.4.lig	AT4G22360	SWIB complex BAF60b domain-containing protein
ath-m.4.str	AT4G22360	SWIB complex BAF60b domain-containing protein
ath-m.4.tis	AT4G22360	SWIB complex BAF60b domain-containing protein
bra-r.6	103860027	uncharacterized LOC103860027
bra-r.6	103834246	uncharacterized LOC103834246
bra-r.6	103861307	uncharacterized LOC103861307
bna-r.1	125589924	transcription factor rlmA-like
bna-r.1	125578304	uncharacterized LOC125578304
bna-r.1	111202242	uncharacterized LOC111202242
ghi-r.1	107960164	uncharacterized LOC107960164
ghi-r.1	107930434	uncharacterized LOC107930434
ghi-r.1	107963716	uncharacterized LOC107963716
cit-r.1	102627106	alpha/beta-gliadin A-III
gma-u.5	100801960	uncharacterized LOC100801960
gma-u.5	100804281	uncharacterized LOC100804281
gma-u.5	100788173	uncharacterized LOC100788173
vvi-u.5	100853436	uncharacterized LOC100853436
vvi-u.5	100264067	uncharacterized LOC100264067
ppo-u.5	18106044	uncharacterized LOC18106044
ppo-u.5	7458496	uncharacterized LOC7458496
mtr-u.5	11423714	uncharacterized LOC11423714
sly-u.5	101256830	uncharacterized LOC101256830
sot-r.1	102595561	uncharacterized LOC102595561
nta-r.1	107795796	uncharacterized LOC107795796
nta-r.1	107811957	uncharacterized LOC107811957
nta-r.1	107817159	uncharacterized LOC107817159
osa-u.5	4345963	uncharacterized LOC4345963
osa-u.5	4337317	uncharacterized LOC4337317
zma-u.5	100193333	uncharacterized LOC100193333
zma-u.5	103654486	formin-like protein 5
zma-u.5	103645800	SWIB complex BAF60b domain-containing protein
tae-r.2	123166280	uncharacterized LOC123166280
tae-r.2	123151064	uncharacterized LOC123151064
tae-r.2	123054764	formin-like protein 1
hvu-r.1	123427995	formin-like
hvu-r.1	123409589	uncharacterized LOC123409589
sbi-r.1	8082561	uncharacterized LOC8082561
sbi-r.1	8064043	skin secretory protein xP2
bdi-r.1	100842878	mediator of RNA polymerase II transcription subunit 15
bdi-r.1	100831700	uncharacterized LOC100831700

Top 50 coexpressed genes to AT4G22360 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT4G22360 (ath-m.9 coexpression data)

CoexMap"828331"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_567661.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_567661.1)

Subcellular
localization
TargetP

other 9

(predict for NP_567661.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT4G22360	ath-u.5 for AT4G22360	ath-r.7 for AT4G22360	ath-e.2 for AT4G22360	ath-m.4.bio for AT4G22360	ath-m.4.hor for AT4G22360	ath-m.4.lig for AT4G22360	ath-m.4.str for AT4G22360	ath-m.4.tis for AT4G22360	bra-r.6 for 103860027	bra-r.6 for 103834246	bra-r.6 for 103861307	bna-r.1 for 125589924	bna-r.1 for 125578304	bna-r.1 for 111202242	ghi-r.1 for 107960164	ghi-r.1 for 107930434	ghi-r.1 for 107963716	cit-r.1 for 102627106	gma-u.5 for 100801960	gma-u.5 for 100804281	gma-u.5 for 100788173	vvi-u.5 for 100853436	vvi-u.5 for 100264067	ppo-u.5 for 18106044	ppo-u.5 for 7458496	mtr-u.5 for 11423714	sly-u.5 for 101256830	sot-r.1 for 102595561	nta-r.1 for 107795796	nta-r.1 for 107811957	nta-r.1 for 107817159	osa-u.5 for 4345963	osa-u.5 for 4337317	zma-u.5 for 100193333	zma-u.5 for 103654486	zma-u.5 for 103645800	tae-r.2 for 123166280	tae-r.2 for 123151064	tae-r.2 for 123054764	hvu-r.1 for 123427995	hvu-r.1 for 123409589	sbi-r.1 for 8082561	sbi-r.1 for 8064043	bdi-r.1 for 100842878	bdi-r.1 for 100831700

Ortholog

Ortholog ID: 3962

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

SWIB complex BAF60b domain-containing protein

uncharacterized LOC103860027

uncharacterized LOC103834246

uncharacterized LOC103861307

transcription factor rlmA-like

uncharacterized LOC125578304

transcription factor rlmA

uncharacterized LOC107930434

uncharacterized LOC107963716

uncharacterized LOC107925273

alpha/beta-gliadin A-III

uncharacterized LOC100801960

uncharacterized LOC100804281

uncharacterized LOC100788173

uncharacterized LOC100853436

uncharacterized LOC100264067

uncharacterized LOC18106044

uncharacterized LOC7458496

uncharacterized LOC11423714

uncharacterized LOC101256830

uncharacterized LOC102595561

uncharacterized LOC107795796

uncharacterized LOC107811957

uncharacterized LOC107824166

uncharacterized LOC4345963

uncharacterized LOC4337317

uncharacterized LOC100193333

formin-like protein 5

SWIB complex BAF60b domain-containing protein

uncharacterized LOC123166280

formin-like protein 1

formin-like

uncharacterized LOC123409589

uncharacterized LOC8082561

skin secretory protein xP2

mediator of RNA polymerase II transcription subunit 15

uncharacterized LOC100831700

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	6
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	3
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7
gma04075	Plant hormone signal transduction	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2
vvi04075	Plant hormone signal transduction	2
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi04120	Ubiquitin mediated proteolysis	2
vvi04075	Plant hormone signal transduction	2
vvi04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	3
mtr04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	4
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03015	mRNA surveillance pathway	2
zma03082	ATP-dependent chromatin remodeling	2
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4
bdi03040	Spliceosome	3
bdi00061	Fatty acid biosynthesis	2
bdi00062	Fatty acid elongation	2
bdi01212	Fatty acid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

828331

103860027

103834246

103861307

125589924

125578304

106360975

107930434

107963716

107925273

102627106

100801960

100804281

100788173

100853436

100264067

18106044

7458496

11423714

101256830

102595561

107795796

107811957

107824166

4345963

4337317

100193333

103654486

103645800

123166280

123190607

123046934

123427995

123409589

8082561

8064043

100842878

100831700

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	3	3	3	1	3	2	2	1	1	1	3	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G22360 (ath-m.9 coexpression data)

Top 50 enrichment test to AT4G22360 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**