ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100853436	uncharacterized LOC100853436
vvi-r.5	100853436	uncharacterized LOC100853436
vvi-u.5	100264067	uncharacterized LOC100264067
ath-u.5	AT4G22360	SWIB complex BAF60b domain-containing protein
gma-u.5	100804281	uncharacterized LOC100804281
gma-u.5	100801960	uncharacterized LOC100801960
gma-u.5	100788173	uncharacterized LOC100788173
ppo-u.5	7458496	uncharacterized LOC7458496
ppo-u.5	18106044	uncharacterized LOC18106044
mtr-u.5	11423714	uncharacterized LOC11423714
sly-u.5	101256830	uncharacterized LOC101256830
osa-u.5	4337317	uncharacterized LOC4337317
osa-u.5	4345963	uncharacterized LOC4345963
zma-u.5	103645800	SWIB complex BAF60b domain-containing protein
zma-u.5	103654486	formin-like protein 5
zma-u.5	100193333	uncharacterized LOC100193333

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(2597 genes)

IEA

GO MF

Protein

XP_003635018.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1

(predict for XP_003635018.2)

Subcellular
localization
TargetP

other 9

(predict for XP_003635018.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100853436	vvi-r.5 for 100853436	vvi-u.5 for 100264067	ath-u.5 for AT4G22360	gma-u.5 for 100804281	gma-u.5 for 100801960	gma-u.5 for 100788173	ppo-u.5 for 7458496	ppo-u.5 for 18106044	mtr-u.5 for 11423714	sly-u.5 for 101256830	osa-u.5 for 4337317	osa-u.5 for 4345963	zma-u.5 for 103645800	zma-u.5 for 103654486	zma-u.5 for 100193333

Ortholog

Ortholog ID: 3962

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC100264067

uncharacterized LOC100853436

SWIB complex BAF60b domain-containing protein

uncharacterized LOC100801960

uncharacterized LOC100804281

uncharacterized LOC103860027

uncharacterized LOC103861307

uncharacterized LOC18106044

uncharacterized LOC7458496

uncharacterized LOC11423714

uncharacterized LOC107925273

uncharacterized LOC107930434

uncharacterized LOC125578304

transcription factor rlmA

alpha/beta-gliadin A-III

uncharacterized LOC101256830

uncharacterized LOC102595561

uncharacterized LOC107824166

uncharacterized LOC107795796

uncharacterized LOC4345963

uncharacterized LOC4337317

uncharacterized LOC100193333

formin-like protein 5

formin-like protein 1

uncharacterized LOC123166280

formin-like

uncharacterized LOC123409589

skin secretory protein xP2

uncharacterized LOC8082561

mediator of RNA polymerase II transcription subunit 15

uncharacterized LOC100831700

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi04120	Ubiquitin mediated proteolysis	2
vvi04075	Plant hormone signal transduction	2
vvi04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2
vvi04075	Plant hormone signal transduction	2
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7
gma04075	Plant hormone signal transduction	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	6
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	3
mtr04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	4
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03015	mRNA surveillance pathway	2
zma03082	ATP-dependent chromatin remodeling	2
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4
bdi03040	Spliceosome	3
bdi00061	Fatty acid biosynthesis	2
bdi00062	Fatty acid elongation	2
bdi01212	Fatty acid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100264067

100853436

828331

100801960

100804281

103860027

103861307

18106044

7458496

11423714

107925273

107930434

125578304

106360975

102627106

101256830

102595561

107824166

107795796

4345963

4337317

100193333

103654486

123046934

123166280

123427995

123409589

8064043

8082561

100842878

100831700

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100853436 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100853436 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	1	3	2	1	1	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100853436 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100853436 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**