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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT4G22410   U4/U6.U5 tri-snRNP-associated-like protein 
 ath-u.5   AT4G22410   U4/U6.U5 tri-snRNP-associated-like protein 
 ath-r.7   AT4G22410   U4/U6.U5 tri-snRNP-associated-like protein 
 ath-e.2   AT4G22410   U4/U6.U5 tri-snRNP-associated-like protein 
 ath-m.4.bio   AT4G22410   U4/U6.U5 tri-snRNP-associated-like protein 
 ath-m.4.hor   AT4G22410   U4/U6.U5 tri-snRNP-associated-like protein 
 ath-m.4.lig   AT4G22410   U4/U6.U5 tri-snRNP-associated-like protein 
 ath-m.4.str   AT4G22410   U4/U6.U5 tri-snRNP-associated-like protein 
 ath-m.4.tis   AT4G22410   U4/U6.U5 tri-snRNP-associated-like protein 
 ath-u.5   AT4G22350   Ubiquitin C-terminal hydrolases superfamily protein 
 ath-u.5   AT4G22285   Ubiquitin C-terminal hydrolases superfamily protein 
 bra-r.6   103861306   U4/U6.U5 tri-snRNP-associated protein 2 
 bra-r.6   117126225   U4/U6.U5 tri-snRNP-associated protein 2-like 
 bra-r.6   103859993   U4/U6.U5 tri-snRNP-associated protein 2 
 bna-r.1   106351450   U4/U6.U5 tri-snRNP-associated protein 2-like 
 bna-r.1   106440444   U4/U6.U5 tri-snRNP-associated protein 2 
 bna-r.1   106437625   U4/U6.U5 tri-snRNP-associated protein 2-like 
 ghi-r.1   107910074   U4/U6.U5 tri-snRNP-associated protein 2 
 ghi-r.1   107963714   U4/U6.U5 tri-snRNP-associated protein 2 
 ghi-r.1   107960167   U4/U6.U5 tri-snRNP-associated protein 2 
 cit-r.1   102617640   uncharacterized LOC102617640 
 gma-u.5   100792529   U4/U6.U5 tri-snRNP-associated protein 2 
 gma-u.5   100792642   U4/U6.U5 tri-snRNP-associated protein 2 
 vvi-u.5   100251887   uncharacterized LOC100251887 
 ppo-u.5   7463667   uncharacterized LOC7463667 
 ppo-u.5   7455836   uncharacterized LOC7455836 
 mtr-u.5   25492882   U4/U6.U5 tri-snRNP-associated protein 2 
 mtr-u.5   11437744   U4/U6.U5 tri-snRNP-associated protein 2 
 sly-u.5   101263781   uncharacterized LOC101263781 
 sot-r.1   102603602   U4/U6.U5 tri-snRNP-associated protein 2-like 
 nta-r.1   107814517   uncharacterized LOC107814517 
 nta-r.1   107777708   uncharacterized LOC107777708 
 nta-r.1   107775060   uncharacterized LOC107775060 
 osa-u.5   4347019   uncharacterized LOC4347019 
 zma-u.5   100285671   uncharacterized LOC100285671 
 tae-r.2   123167533   U4/U6.U5 tri-snRNP-associated protein 2 
 tae-r.2   123150293   U4/U6.U5 tri-snRNP-associated protein 2 
 tae-r.2   123088443   U4/U6.U5 tri-snRNP-associated protein 2 
 hvu-r.1   123426749   U4/U6.U5 tri-snRNP-associated protein 2-like 
 sbi-r.1   8065093   U4/U6.U5 tri-snRNP-associated protein 2 
 bdi-r.1   100842673   U4/U6.U5 tri-snRNP-associated protein 2 
 cre-r.1   CHLRE_17g721600v5   uncharacterized protein 

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Top 50 coexpressed genes to AT4G22410 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G22410 (ath-m.9 coexpression data)

CoexMap"828336"


athAT4G22410 | Entrez gene ID : 828336      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 1 2 1 2 2 1 1 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (39 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
Protein NP_001320032.1 [sequence] [blastp]
NP_001329946.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for NP_001320032.1)
chlo 6,  cyto 1,  mito 1  (predict for NP_001329946.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001320032.1)
other 5  (predict for NP_001329946.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT4G22410
ath-u.5
for
AT4G22410
ath-r.7
for
AT4G22410
ath-e.2
for
AT4G22410
ath-m.4.bio
for
AT4G22410
ath-m.4.hor
for
AT4G22410
ath-m.4.lig
for
AT4G22410
ath-m.4.str
for
AT4G22410
ath-m.4.tis
for
AT4G22410
ath-u.5
for
AT4G22350
ath-u.5
for
AT4G22285
bra-r.6
for
103861306
bra-r.6
for
117126225
bra-r.6
for
103859993
bna-r.1
for
106351450
bna-r.1
for
106440444
bna-r.1
for
106437625
ghi-r.1
for
107910074
ghi-r.1
for
107963714
ghi-r.1
for
107960167
cit-r.1
for
102617640
gma-u.5
for
100792529
gma-u.5
for
100792642
vvi-u.5
for
100251887
ppo-u.5
for
7463667
ppo-u.5
for
7455836
mtr-u.5
for
25492882
mtr-u.5
for
11437744
sly-u.5
for
101263781
sot-r.1
for
102603602
nta-r.1
for
107814517
nta-r.1
for
107777708
nta-r.1
for
107775060
osa-u.5
for
4347019
zma-u.5
for
100285671
tae-r.2
for
123167533
tae-r.2
for
123150293
tae-r.2
for
123088443
hvu-r.1
for
123426749
sbi-r.1
for
8065093
bdi-r.1
for
100842673
cre-r.1
for
CHLRE_17g721600v5


Ortholog ID: 5806
Species ath ath ath bra bra bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT4G22410 AT4G22350 AT4G22285 LOC103861306 LOC117126225 LOC103859993 LOC106351450 LOC106376520 LOC107910074 LOC107963714 LOC107960167 LOC102617640 LOC100792529 LOC100792642 LOC100251887 LOC7463667 LOC7455836 LOC25492882 LOC11437744 LOC101263781 LOC102603602 LOC107814517 LOC107777708 LOC107775060 LOC4347019 LOC100285671 LOC123167533 LOC123150293 LOC123088443 LOC123426749 LOC8065093 LOC100842673 CHLRE_17g721600v5
Function* U4/U6.U5 tri-snRNP-associated-like protein Ubiquitin C-terminal hydrolases superfamily protein Ubiquitin C-terminal hydrolases superfamily protein U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2-like U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2-like U4/U6.U5 tri-snRNP-associated protein 2-like U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 uncharacterized LOC102617640 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 uncharacterized LOC100251887 uncharacterized LOC7463667 uncharacterized LOC7455836 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 uncharacterized LOC101263781 U4/U6.U5 tri-snRNP-associated protein 2-like uncharacterized LOC107814517 uncharacterized LOC107777708 uncharacterized LOC107775060 uncharacterized LOC4347019 uncharacterized LOC100285671 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2-like U4/U6.U5 tri-snRNP-associated protein 2 U4/U6.U5 tri-snRNP-associated protein 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03013 Nucleocytoplasmic transport 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 6
bna00970 Aminoacyl-tRNA biosynthesis 3
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 4
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi04136 Autophagy - other 2
vvi04120 Ubiquitin mediated proteolysis 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03040 Spliceosome 2
sot00770 Pantothenate and CoA biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03013 Nucleocytoplasmic transport 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828336 828330 5008155 103861306 117126225 103859993 106351450 106376520 107910074 107963714 107960167 102617640 100792529 100792642 100251887 7463667 7455836 25492882 11437744 101263781 102603602 107814517 107777708 107775060 4347019 100285671 123167533 123150293 123088443 123426749 8065093 100842673 5722698
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