ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT5G09630	LisH/CRA/RING-U-box domains-containing protein
ath-u.5	AT5G09630	LisH/CRA/RING-U-box domains-containing protein
ath-r.7	AT5G09630	LisH/CRA/RING-U-box domains-containing protein
ath-e.2	AT5G09630	LisH/CRA/RING-U-box domains-containing protein
ath-m.4.bio	AT5G09630	LisH/CRA/RING-U-box domains-containing protein
ath-m.4.hor	AT5G09630	LisH/CRA/RING-U-box domains-containing protein
ath-m.4.lig	AT5G09630	LisH/CRA/RING-U-box domains-containing protein
ath-m.4.str	AT5G09630	LisH/CRA/RING-U-box domains-containing protein
ath-m.4.tis	AT5G09630	LisH/CRA/RING-U-box domains-containing protein
ath-u.5	AT2G22690	zinc ion binding protein
ath-u.5	AT4G37880	LisH/CRA/RING-U-box domains-containing protein
bra-r.6	103856919	protein RMD5 homolog
bna-r.1	125605085	protein RMD5 homolog
bna-r.1	106389761	protein RMD5 homolog
bna-r.1	106361391	protein RMD5 homolog
ghi-r.1	121209319	protein RMD5 homolog
ghi-r.1	121208262	protein RMD5 homolog
ghi-r.1	107950500	protein RMD5 homolog
cit-r.1	102619036	protein RMD5 homolog
cit-r.1	102628081	protein RMD5 homolog
gma-u.5	100799584	protein RMD5 homolog
gma-u.5	100792593	protein RMD5 homolog
gma-u.5	100788371	protein RMD5 homolog
vvi-u.5	100252683	protein RMD5 homolog
ppo-u.5	7482186	protein RMD5 homolog
ppo-u.5	7478687	protein RMD5 homolog
ppo-u.5	7478770	protein RMD5 homolog
mtr-u.5	11437981	protein RMD5 homolog
mtr-u.5	11434344	protein RMD5 homolog
sly-u.5	101249974	protein RMD5 homolog
sot-r.1	102586858	protein RMD5 homolog A
nta-r.1	107829980	protein RMD5 homolog
nta-r.1	107805440	protein RMD5 homolog
osa-u.5	4341403	protein RMD5 homolog
zma-u.5	100282775	uncharacterized LOC100282775
tae-r.2	123071322	protein RMD5 homolog
tae-r.2	123079661	protein RMD5 homolog
tae-r.2	123127955	protein RMD5 homolog
hvu-r.1	123444964	protein RMD5 homolog
hvu-r.1	123409735	protein RMD5 homolog
hvu-r.1	123403486	protein RMD5 homolog
sbi-r.1	8073176	protein RMD5 homolog A
bdi-r.1	100827965	protein RMD5 homolog
bdi-r.1	100835107	protein RMD5 homolog
cre-r.1	CHLRE_11g467574v5	uncharacterized protein

Top 50 coexpressed genes to AT5G09630 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G09630 (ath-m.9 coexpression data)

CoexMap"830822"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0061630 [list] [network] ubiquitin protein ligase activity

(83 genes)

IEA

Protein

NP_196525.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, nucl 3

(predict for NP_196525.1)

Subcellular
localization
TargetP

other 8

(predict for NP_196525.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT5G09630	ath-u.5 for AT5G09630	ath-r.7 for AT5G09630	ath-e.2 for AT5G09630	ath-m.4.bio for AT5G09630	ath-m.4.hor for AT5G09630	ath-m.4.lig for AT5G09630	ath-m.4.str for AT5G09630	ath-m.4.tis for AT5G09630	ath-u.5 for AT2G22690	ath-u.5 for AT4G37880	bra-r.6 for 103856919	bna-r.1 for 125605085	bna-r.1 for 106389761	bna-r.1 for 106361391	ghi-r.1 for 121209319	ghi-r.1 for 121208262	ghi-r.1 for 107950500	cit-r.1 for 102619036	cit-r.1 for 102628081	gma-u.5 for 100799584	gma-u.5 for 100792593	gma-u.5 for 100788371	vvi-u.5 for 100252683	ppo-u.5 for 7482186	ppo-u.5 for 7478687	ppo-u.5 for 7478770	mtr-u.5 for 11437981	mtr-u.5 for 11434344	sly-u.5 for 101249974	sot-r.1 for 102586858	nta-r.1 for 107829980	nta-r.1 for 107805440	osa-u.5 for 4341403	zma-u.5 for 100282775	tae-r.2 for 123071322	tae-r.2 for 123079661	tae-r.2 for 123127955	hvu-r.1 for 123444964	hvu-r.1 for 123409735	hvu-r.1 for 123403486	sbi-r.1 for 8073176	bdi-r.1 for 100827965	bdi-r.1 for 100835107	cre-r.1 for CHLRE_11g467574v5

Ortholog

Ortholog ID: 3304

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

LisH/CRA/RING-U-box domains-containing protein

zinc ion binding protein

LisH/CRA/RING-U-box domains-containing protein

protein RMD5 homolog

protein RMD5 homolog A

protein RMD5 homolog

uncharacterized LOC100282775

protein RMD5 homolog

protein RMD5 homolog A

protein RMD5 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5
bna04141	Protein processing in endoplasmic reticulum	2
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	4
bna04141	Protein processing in endoplasmic reticulum	4
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	3
bna04120	Ubiquitin mediated proteolysis	2
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3
ghi04130	SNARE interactions in vesicular transport	2
ghi00740	Riboflavin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2
cit03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	4
sot04120	Ubiquitin mediated proteolysis	2
sot03008	Ribosome biogenesis in eukaryotes	2
sot03083	Polycomb repressive complex	2
sot04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	3
nta04075	Plant hormone signal transduction	3
nta04626	Plant-pathogen interaction	3
nta04136	Autophagy - other	2
nta00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	4
nta04075	Plant hormone signal transduction	4
nta04626	Plant-pathogen interaction	4
nta04136	Autophagy - other	2
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	2
hvu00071	Fatty acid degradation	2
hvu00410	beta-Alanine metabolism	2
hvu00640	Propanoate metabolism	2
hvu01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04136	Autophagy - other	5
cre04145	Phagosome	2

Expression

Expression pattern

Entrez Gene ID^*

830822

816800

829944

103856919

106389761

106361391

106426840

107950500

107945116

107914351

102619036

102628081

100799584

100792593

100782483

100252683

7482186

7478687

7481820

11437981

11434344

101249974

102586858

107829980

107805440

4341403

100282775

123071322

123165746

123148091

123444964

123409735

123403486

8073176

100827965

100835107

5726948

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	1	3	3	2	3	1	3	2	1	1	2	1	1	3	3	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G09630 (ath-m.9 coexpression data)

Top 50 enrichment test to AT5G09630 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**