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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100799584   protein RMD5 homolog 
 gma-r.7   100799584   protein RMD5 homolog 
 gma-m.5   100799584   protein RMD5 homolog 
 gma-u.5   100792593   protein RMD5 homolog 
 gma-u.5   100788371   protein RMD5 homolog 
 gma-u.5   100782483   protein RMD5 homolog 
 mtr-u.5   11437981   protein RMD5 homolog 
 mtr-u.5   11434344   protein RMD5 homolog 
 ppo-u.5   7478770   protein RMD5 homolog 
 ppo-u.5   7482186   protein RMD5 homolog 
 ppo-u.5   7478687   protein RMD5 homolog 
 ath-u.5   AT2G22690   zinc ion binding protein 
 ath-u.5   AT4G37880   LisH/CRA/RING-U-box domains-containing protein 
 ath-u.5   AT5G09630   LisH/CRA/RING-U-box domains-containing protein 
 vvi-u.5   100252683   protein RMD5 homolog 
 sly-u.5   101249974   protein RMD5 homolog 
 osa-u.5   4341403   protein RMD5 homolog 
 zma-u.5   100282775   uncharacterized LOC100282775 

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Top 50 coexpressed genes to 100799584 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100799584 (gma-u.5 coexpression data)

CoexMap"100799584"


gmaLOC100799584 | Entrez gene ID : 100799584      
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 6 2 3 3 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (267 genes)  IEA  
GO CC
GO:0034657 [list] [network] GID complex  (11 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (292 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003543120.1 [sequence] [blastp]
XP_006594660.1 [sequence] [blastp]
XP_006594661.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  mito 1,  pero 1,  cysk 1  (predict for XP_003543120.1)
nucl 4,  cyto 4,  mito 1,  pero 1,  cysk 1  (predict for XP_006594660.1)
nucl 4,  cyto 4,  mito 1,  pero 1,  cysk 1  (predict for XP_006594661.1)
Subcellular
localization
TargetP
other 8  (predict for XP_003543120.1)
other 8  (predict for XP_006594660.1)
other 8  (predict for XP_006594661.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100799584

.
gma-r.7
for
100799584

.
gma-m.5
for
100799584

.
gma-u.5
for
100792593

.
gma-u.5
for
100788371

.
gma-u.5
for
100782483

.
mtr-u.5
for
11437981

.
mtr-u.5
for
11434344

.
ppo-u.5
for
7478770

.
ppo-u.5
for
7482186

.
ppo-u.5
for
7478687

.
ath-u.5
for
AT2G22690

.
ath-u.5
for
AT4G37880

.
ath-u.5
for
AT5G09630

.
vvi-u.5
for
100252683

.
sly-u.5
for
101249974

.
osa-u.5
for
4341403

.
zma-u.5
for
100282775

.


Ortholog ID: 3304
Species ath ath gma gma sly osa zma bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit cit bdi bdi nta nta
Symbol AT5G09630 AT2G22690 LOC100792593 LOC100799584 LOC101249974 LOC4341403 LOC100282775 LOC103856919 LOC100252683 LOC7482186 LOC7478687 LOC11434344 LOC11437981 LOC123165746 LOC123148091 LOC123409735 LOC123403486 LOC107914351 LOC107945116 LOC106389761 LOC106361391 CHLRE_11g467574v5 LOC8073176 LOC102586858 LOC102619036 LOC102628081 LOC100835107 LOC100827965 LOC107805440 LOC107829980
Function* LisH/CRA/RING-U-box domains-containing protein zinc ion binding protein protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog uncharacterized LOC100282775 protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog uncharacterized protein protein RMD5 homolog A protein RMD5 homolog A protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog protein RMD5 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
hvu00071 Fatty acid degradation 2
hvu00410 beta-Alanine metabolism 2
hvu00640 Propanoate metabolism 2
hvu01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03272 Virion - Hepatitis viruses 2
ghi04144 Endocytosis 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
ghi04130 SNARE interactions in vesicular transport 2
ghi00740 Riboflavin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna04141 Protein processing in endoplasmic reticulum 2
bna04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
bna04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04136 Autophagy - other 5
cre04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
sot04120 Ubiquitin mediated proteolysis 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot03083 Polycomb repressive complex 2
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 4
nta04075 Plant hormone signal transduction 4
nta04626 Plant-pathogen interaction 4
nta04136 Autophagy - other 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 3
nta04075 Plant hormone signal transduction 3
nta04626 Plant-pathogen interaction 3
nta04136 Autophagy - other 2
nta00770 Pantothenate and CoA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830822 816800 100792593 100799584 101249974 4341403 100282775 103856919 100252683 7482186 7478687 11434344 11437981 123165746 123148091 123409735 123403486 107914351 107945116 106389761 106361391 5726948 8073176 102586858 102619036 102628081 100835107 100827965 107805440 107829980
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