ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	RING1	RING/U-box superfamily protein
ath-u.5	RING1	RING/U-box superfamily protein
ath-r.7	RING1	RING/U-box superfamily protein
ath-e.2	RING1	RING/U-box superfamily protein
ath-m.4.bio	RING1	RING/U-box superfamily protein
ath-m.4.hor	RING1	RING/U-box superfamily protein
ath-m.4.lig	RING1	RING/U-box superfamily protein
ath-m.4.str	RING1	RING/U-box superfamily protein
ath-m.4.tis	RING1	RING/U-box superfamily protein
ath-u.5	AT4G33565	RING/U-box superfamily protein
ath-u.5	AT1G72220	RING/U-box superfamily protein
bra-r.6	103852763	RING-H2 finger protein ATL54
bra-r.6	103834472	RING-H2 finger protein ATL54
bra-r.6	103847555	E3 ubiquitin-protein ligase RING1
bna-r.1	106416763	RING-H2 finger protein ATL54
bna-r.1	106404494	E3 ubiquitin-protein ligase RING1-like
ghi-r.1	121210810	RING-H2 finger protein ATL54
ghi-r.1	107949145	E3 ubiquitin-protein ligase RING1
ghi-r.1	107928616	RING-H2 finger protein ATL54
cit-r.1	102614612	RING-H2 finger protein ATL54-like
cit-r.1	102617929	RING-H2 finger protein ATL54-like
cit-r.1	102627101	RING-H2 finger protein ATL52-like
gma-u.5	102663026	RING-H2 finger protein ATL52
gma-u.5	100781245	RING-H2 finger protein ATL54
vvi-u.5	100854240	RING-H2 finger protein ATL54
vvi-u.5	100854068	RING-H2 finger protein ATL54
vvi-u.5	100257251	RING-H2 finger protein ATL54
ppo-u.5	7486081	RING-H2 finger protein ATL54
ppo-u.5	7461256	E3 ubiquitin-protein ligase RING1
ppo-u.5	7466783	E3 ubiquitin-protein ligase RING1
mtr-u.5	11434338	RING-H2 finger protein ATL54
mtr-u.5	11433251	RING-H2 finger protein ATL54
mtr-u.5	11411830	RING-H2 finger protein ATL54
sly-u.5	101247705	RING-H2 finger protein ATL54
sly-u.5	101267886	RING-H2 finger protein ATL54-like
sot-r.1	102593196	RING-H2 finger protein ATL54
sot-r.1	102597750	RING-H2 finger protein ATL54-like
sot-r.1	102589761	E3 ubiquitin-protein ligase RING1-like
nta-r.1	107770923	RING-H2 finger protein ATL54
nta-r.1	107812361	uncharacterized LOC107812361
osa-u.5	4335997	RING-H2 finger protein ATL51
osa-u.5	9267130	E3 ubiquitin-protein ligase Os04g0590900-like
zma-u.5	100272434	putative RING zinc finger domain superfamily protein
zma-u.5	103653664	RING-H2 finger protein ATL5
tae-r.2	123053457	RING-H2 finger protein ATL52
tae-r.2	123185533	RING-H2 finger protein ATL52
hvu-r.1	123426868	RING-H2 finger protein ATL52-like
hvu-r.1	123411554	E3 ubiquitin-protein ligase RING1-like
sbi-r.1	8072614	E3 ubiquitin-protein ligase RING1
sbi-r.1	8073398	RING-H2 finger protein ATL51
bdi-r.1	100836409	RING-H2 finger protein ATL52

Top 50 coexpressed genes to RING1 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to RING1 (ath-m.9 coexpression data)

CoexMap"830902"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0051865 [list] [network] protein autoubiquitination	(18 genes)	IDA
GO:0002238 [list] [network] response to molecule of fungal origin	(21 genes)	IEP
GO:0043068 [list] [network] positive regulation of programmed cell death	(34 genes)	IMP
GO:0012501 [list] [network] programmed cell death	(103 genes)	IC
GO:0016567 [list] [network] protein ubiquitination	(170 genes)	IDA
GO:0009617 [list] [network] response to bacterium	(500 genes)	IEP

GO CC

GO:0005886 [list] [network] plasma membrane	(2598 genes)	IDA
GO:0005739 [list] [network] mitochondrion	(4244 genes)	ISM

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity

(268 genes)

IDA

Protein

NP_196600.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, mito 1, cyto 1, E.R. 1, cyto_mito 1, mito_plas 1, cyto_E.R. 1

(predict for NP_196600.1)

Subcellular
localization
TargetP

mito 4

(predict for NP_196600.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for RING1	ath-u.5 for RING1	ath-r.7 for RING1	ath-e.2 for RING1	ath-m.4.bio for RING1	ath-m.4.hor for RING1	ath-m.4.lig for RING1	ath-m.4.str for RING1	ath-m.4.tis for RING1	ath-u.5 for AT4G33565	ath-u.5 for AT1G72220	bra-r.6 for 103852763	bra-r.6 for 103834472	bra-r.6 for 103847555	bna-r.1 for 106416763	bna-r.1 for 106404494	ghi-r.1 for 121210810	ghi-r.1 for 107949145	ghi-r.1 for 107928616	cit-r.1 for 102614612	cit-r.1 for 102617929	cit-r.1 for 102627101	gma-u.5 for 102663026	gma-u.5 for 100781245	vvi-u.5 for 100854240	vvi-u.5 for 100854068	vvi-u.5 for 100257251	ppo-u.5 for 7486081	ppo-u.5 for 7461256	ppo-u.5 for 7466783	mtr-u.5 for 11434338	mtr-u.5 for 11433251	mtr-u.5 for 11411830	sly-u.5 for 101247705	sly-u.5 for 101267886	sot-r.1 for 102593196	sot-r.1 for 102597750	sot-r.1 for 102589761	nta-r.1 for 107770923	nta-r.1 for 107812361	osa-u.5 for 4335997	osa-u.5 for 9267130	zma-u.5 for 100272434	zma-u.5 for 103653664	tae-r.2 for 123053457	tae-r.2 for 123185533	hvu-r.1 for 123426868	hvu-r.1 for 123411554	sbi-r.1 for 8072614	sbi-r.1 for 8073398	bdi-r.1 for 100836409

Ortholog

Ortholog ID: 1245

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

RING1

Function^*

RING/U-box superfamily protein

RING-H2 finger protein ATL54

E3 ubiquitin-protein ligase RING1