ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT5G10630	Translation elongation factor EF1A/initiation factor IF2gamma family protein
ath-u.5	AT5G10630	Translation elongation factor EF1A/initiation factor IF2gamma family protein
ath-r.7	AT5G10630	Translation elongation factor EF1A/initiation factor IF2gamma family protein
ath-e.2	AT5G10630	Translation elongation factor EF1A/initiation factor IF2gamma family protein
ath-m.4.bio	AT5G10630	Translation elongation factor EF1A/initiation factor IF2gamma family protein
ath-m.4.hor	AT5G10630	Translation elongation factor EF1A/initiation factor IF2gamma family protein
ath-m.4.lig	AT5G10630	Translation elongation factor EF1A/initiation factor IF2gamma family protein
ath-m.4.str	AT5G10630	Translation elongation factor EF1A/initiation factor IF2gamma family protein
ath-m.4.tis	AT5G10630	Translation elongation factor EF1A/initiation factor IF2gamma family protein
bra-r.6	103850312	elongation factor 1-alpha 1
bra-r.6	103855879	HBS1-like protein
bna-r.1	106430228	HBS1-like protein
bna-r.1	106384889	HBS1-like protein
bna-r.1	106383222	HBS1-like protein
ghi-r.1	107961757	HBS1-like protein
ghi-r.1	107937919	HBS1-like protein
ghi-r.1	107906768	HBS1-like protein
cit-r.1	102609501	uncharacterized LOC102609501
gma-u.5	100798594	HBS1-like protein
gma-u.5	100801724	elongation factor 1-alpha
vvi-u.5	100262342	uncharacterized LOC100262342
ppo-u.5	7458736	uncharacterized LOC7458736
ppo-u.5	18100762	uncharacterized LOC18100762
mtr-u.5	11406169	elongation factor 1-alpha
sly-u.5	101264306	uncharacterized LOC101264306
sly-u.5	101256564	uncharacterized LOC101256564
sot-r.1	102603749	HBS1-like protein
sot-r.1	102586109	HBS1-like protein
nta-r.1	107784138	uncharacterized LOC107784138
nta-r.1	107830579	uncharacterized LOC107830579
nta-r.1	107810086	uncharacterized LOC107810086
osa-u.5	4337409	uncharacterized LOC4337409
osa-u.5	4326095	uncharacterized LOC4326095
osa-u.5	4336848	uncharacterized LOC4336848
zma-u.5	103645758	HBS1-like protein
zma-u.5	103642014	HBS1-like protein
tae-r.2	123190335	HBS1-like protein
tae-r.2	123054472	HBS1-like protein
tae-r.2	123046604	elongation factor 1-alpha
hvu-r.1	123427772	HBS1-like protein
hvu-r.1	123428344	HBS1-like protein
sbi-r.1	8085873	HBS1-like protein
sbi-r.1	8071103	HBS1-like protein
bdi-r.1	100840685	HBS1-like protein
bdi-r.1	100826934	HBS1-like protein
cre-r.1	CHLRE_13g565750v5	uncharacterized protein

Top 50 coexpressed genes to AT5G10630 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G10630 (ath-m.9 coexpression data)

CoexMap"830928"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03015 [list] [network] mRNA surveillance pathway (119 genes)

GO BP

GO:0070481 [list] [network] nuclear-transcribed mRNA catabolic process, non-stop decay	(3 genes)	IEP
GO:1902373 [list] [network] negative regulation of mRNA catabolic process	(12 genes)	IMP

GO CC

GO:0005737 [list] [network] cytoplasm

(14000 genes)

ISM

GO MF

GO:0003924 [list] [network] GTPase activity	(76 genes)	IEA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001190282.1 [sequence] [blastp]
NP_001331941.1 [sequence] [blastp]
NP_001331942.1 [sequence] [blastp]
NP_001331943.1 [sequence] [blastp]
NP_196625.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 2, chlo 1, cysk 1, mito 1, vacu 1, cysk_plas 1	(predict for NP_001190282.1)
nucl 6, cysk 2, chlo 1	(predict for NP_001331941.1)
nucl 6, cysk 2, chlo 1	(predict for NP_001331942.1)
nucl 4, cyto 2, chlo 1, cysk 1, mito 1, vacu 1, cysk_plas 1	(predict for NP_001331943.1)
nucl 4, cyto 2, chlo 1, cysk 1, mito 1, vacu 1, cysk_plas 1	(predict for NP_196625.2)

Subcellular
localization
TargetP

other 9	(predict for NP_001190282.1)
other 9	(predict for NP_001331941.1)
other 9	(predict for NP_001331942.1)
other 9	(predict for NP_001331943.1)
other 9	(predict for NP_196625.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT5G10630	ath-u.5 for AT5G10630	ath-r.7 for AT5G10630	ath-e.2 for AT5G10630	ath-m.4.bio for AT5G10630	ath-m.4.hor for AT5G10630	ath-m.4.lig for AT5G10630	ath-m.4.str for AT5G10630	ath-m.4.tis for AT5G10630	bra-r.6 for 103850312	bra-r.6 for 103855879	bna-r.1 for 106430228	bna-r.1 for 106384889	bna-r.1 for 106383222	ghi-r.1 for 107961757	ghi-r.1 for 107937919	ghi-r.1 for 107906768	cit-r.1 for 102609501	gma-u.5 for 100798594	gma-u.5 for 100801724	vvi-u.5 for 100262342	ppo-u.5 for 7458736	ppo-u.5 for 18100762	mtr-u.5 for 11406169	sly-u.5 for 101264306	sly-u.5 for 101256564	sot-r.1 for 102603749	sot-r.1 for 102586109	nta-r.1 for 107784138	nta-r.1 for 107830579	nta-r.1 for 107810086	osa-u.5 for 4337409	osa-u.5 for 4326095	osa-u.5 for 4336848	zma-u.5 for 103645758	zma-u.5 for 103642014	tae-r.2 for 123190335	tae-r.2 for 123054472	tae-r.2 for 123046604	hvu-r.1 for 123427772	hvu-r.1 for 123428344	sbi-r.1 for 8085873	sbi-r.1 for 8071103	bdi-r.1 for 100840685	bdi-r.1 for 100826934	cre-r.1 for CHLRE_13g565750v5

Ortholog

Ortholog ID: 4286

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Translation elongation factor EF1A/initiation factor IF2gamma family protein

elongation factor 1-alpha 1

HBS1-like protein

uncharacterized LOC102609501

HBS1-like protein

elongation factor 1-alpha

uncharacterized LOC100262342

uncharacterized LOC7458736

uncharacterized LOC18100762

elongation factor 1-alpha

uncharacterized LOC101264306

uncharacterized LOC101256564

HBS1-like protein

uncharacterized LOC107830579

uncharacterized LOC107810086

uncharacterized LOC107788851

uncharacterized LOC4337409

uncharacterized LOC4326095

uncharacterized LOC4336848

HBS1-like protein

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna00270	Cysteine and methionine metabolism	2
bna00920	Sulfur metabolism	2
bna01200	Carbon metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	5
bna00270	Cysteine and methionine metabolism	2
bna00920	Sulfur metabolism	2
bna01200	Carbon metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna00270	Cysteine and methionine metabolism	2
bna00920	Sulfur metabolism	2
bna01200	Carbon metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2
cit01200	Carbon metabolism	2
cit01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03015	mRNA surveillance pathway	2
gma00061	Fatty acid biosynthesis	2
gma00071	Fatty acid degradation	2
gma01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03015	mRNA surveillance pathway	2
gma04148	Efferocytosis	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	3
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	4
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	3
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	5
sbi04120	Ubiquitin mediated proteolysis	2
sbi04382	Cornified envelope formation	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03015	mRNA surveillance pathway	2
bdi03040	Spliceosome	2
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

830928

103850312

103855879

106430228

106383222

111202786

107961757

107937919

107902013

102609501

100798594

100801724

100262342

7458736

18100762

11406169

101264306

101256564

102603749

102586109

107830579

107810086

107788851

4337409

4326095

4336848

103645758

103642014

123190335

123191047

123055211

123427772

123428344

8085873

8071103

100840685

100826934

5719048

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	2	3	3	1	2	1	2	1	2	2	3	3	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G10630 (ath-m.9 coexpression data)

Top 50 enrichment test to AT5G10630 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**