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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT5G40140   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-u.5   AT5G40140   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-r.7   AT5G40140   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-e.2   AT5G40140   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-m.4.bio   AT5G40140   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-m.4.hor   AT5G40140   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-m.4.lig   AT5G40140   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-m.4.str   AT5G40140   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-m.4.tis   AT5G40140   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-u.5   PUB39   PLANT U-BOX 39 
 ath-u.5   AT5G62560   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-u.5   PUB38   plant U-box 38 
 bra-r.6   103855018   U-box domain-containing protein 41 
 bra-r.6   103873200   U-box domain-containing protein 39 
 bra-r.6   103855284   U-box domain-containing protein 38 
 bna-r.1   125601723   U-box domain-containing protein 41-like 
 bna-r.1   125581596   U-box domain-containing protein 38-like 
 bna-r.1   125588885   U-box domain-containing protein 38-like 
 ghi-r.1   107958591   U-box domain-containing protein 40 
 ghi-r.1   107894527   U-box domain-containing protein 38 
 ghi-r.1   107899126   U-box domain-containing protein 38 
 cit-r.1   102630257   U-box domain-containing protein 40 
 cit-r.1   102627264   U-box domain-containing protein 38-like 
 gma-u.5   100815075   U-box domain-containing protein 38 
 gma-u.5   100784564   U-box domain-containing protein 38 
 gma-u.5   100798675   U-box domain-containing protein 40 
 vvi-u.5   100255877   U-box domain-containing protein 40 
 vvi-u.5   100244998   U-box domain-containing protein 38 
 ppo-u.5   7453750   U-box domain-containing protein 38 
 ppo-u.5   7458016   U-box domain-containing protein 38 
 mtr-u.5   11434906   U-box domain-containing protein 40 
 mtr-u.5   25489555   U-box domain-containing protein 38 
 sly-u.5   101258053   U-box domain-containing protein 38 
 sly-u.5   101243948   U-box domain-containing protein 40 
 sot-r.1   102580324   U-box domain-containing protein 40 
 sot-r.1   102582496   U-box domain-containing protein 38-like 
 nta-r.1   107811564   U-box domain-containing protein 40-like 
 nta-r.1   107794293   U-box domain-containing protein 40-like 
 nta-r.1   107791007   U-box domain-containing protein 40-like 
 osa-u.5   4340611   U-box domain-containing protein 39 
 osa-u.5   107276525   U-box domain-containing protein 39 
 zma-u.5   103637803   U-box domain-containing protein 39 
 tae-r.2   123152078   U-box domain-containing protein 41-like 
 tae-r.2   123162339   U-box domain-containing protein 39 
 tae-r.2   123165193   U-box domain-containing protein 39 
 hvu-r.1   123409895   U-box domain-containing protein 40 
 sbi-r.1   8065702   U-box domain-containing protein 39 
 bdi-r.1   100825276   U-box domain-containing protein 39 

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Top 50 coexpressed genes to AT5G40140 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G40140 (ath-m.9 coexpression data)

CoexMap"834011"


athAT5G40140 | Entrez gene ID : 834011      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 2 3 2 2 2 2 2 3 2 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (83 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_198830.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 4  (predict for NP_198830.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_198830.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT5G40140
ath-u.5
for
AT5G40140
ath-r.7
for
AT5G40140
ath-e.2
for
AT5G40140
ath-m.4.bio
for
AT5G40140
ath-m.4.hor
for
AT5G40140
ath-m.4.lig
for
AT5G40140
ath-m.4.str
for
AT5G40140
ath-m.4.tis
for
AT5G40140
ath-u.5
for
PUB39
ath-u.5
for
AT5G62560
ath-u.5
for
PUB38
bra-r.6
for
103855018
bra-r.6
for
103873200
bra-r.6
for
103855284
bna-r.1
for
125601723
bna-r.1
for
125581596
bna-r.1
for
125588885
ghi-r.1
for
107958591
ghi-r.1
for
107894527
ghi-r.1
for
107899126
cit-r.1
for
102630257
cit-r.1
for
102627264
gma-u.5
for
100815075
gma-u.5
for
100784564
gma-u.5
for
100798675
vvi-u.5
for
100255877
vvi-u.5
for
100244998
ppo-u.5
for
7453750
ppo-u.5
for
7458016
mtr-u.5
for
11434906
mtr-u.5
for
25489555
sly-u.5
for
101258053
sly-u.5
for
101243948
sot-r.1
for
102580324
sot-r.1
for
102582496
nta-r.1
for
107811564
nta-r.1
for
107794293
nta-r.1
for
107791007
osa-u.5
for
4340611
osa-u.5
for
107276525
zma-u.5
for
103637803
tae-r.2
for
123152078
tae-r.2
for
123162339
tae-r.2
for
123165193
hvu-r.1
for
123409895
sbi-r.1
for
8065702
bdi-r.1
for
100825276


Ortholog ID: 2734
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma tae tae tae hvu sbi bdi
Symbol PUB39 AT5G62560 PUB38 LOC103855018 LOC103873200 LOC103863953 LOC125581596 LOC106446129 LOC106382884 LOC107958591 LOC107899126 LOC107955571 LOC102630257 LOC102627264 LOC100784564 LOC100798675 LOC100775869 LOC100255877 LOC100244998 LOC7453750 LOC7458016 LOC11434906 LOC25489555 LOC101258053 LOC101243948 LOC102580324 LOC102582496 LOC107794293 LOC107791007 LOC107765884 LOC4340611 LOC107276525 LOC103637803 LOC123152078 LOC123162339 LOC123165193 LOC123409895 LOC8065702 LOC100825276
Function* PLANT U-BOX 39 RING/U-box superfamily protein with ARM repeat domain-containing protein plant U-box 38 U-box domain-containing protein 41 U-box domain-containing protein 39 U-box domain-containing protein 40 U-box domain-containing protein 38-like U-box domain-containing protein 40-like U-box domain-containing protein 38 U-box domain-containing protein 40 U-box domain-containing protein 38 U-box domain-containing protein 40 U-box domain-containing protein 40 U-box domain-containing protein 38-like U-box domain-containing protein 38 U-box domain-containing protein 40 U-box domain-containing protein 40 U-box domain-containing protein 40 U-box domain-containing protein 38 U-box domain-containing protein 38 U-box domain-containing protein 38 U-box domain-containing protein 40 U-box domain-containing protein 38 U-box domain-containing protein 38 U-box domain-containing protein 40 U-box domain-containing protein 40 U-box domain-containing protein 38-like U-box domain-containing protein 40-like U-box domain-containing protein 40-like U-box domain-containing protein 40-like U-box domain-containing protein 39 U-box domain-containing protein 39 U-box domain-containing protein 39 U-box domain-containing protein 41-like U-box domain-containing protein 39 U-box domain-containing protein 39 U-box domain-containing protein 40 U-box domain-containing protein 39 U-box domain-containing protein 39
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
ghi03272 Virion - Hepatitis viruses 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 8
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 3
tae04070 Phosphatidylinositol signaling system 3
tae04075 Plant hormone signal transduction 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 3
hvu04016 MAPK signaling pathway - plant 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823936 836376 836643 103855018 103873200 103863953 125581596 106446129 106382884 107958591 107899126 107955571 102630257 102627264 100784564 100798675 100775869 100255877 100244998 7453750 7458016 11434906 25489555 101258053 101243948 102580324 102582496 107794293 107791007 107765884 4340611 107276525 103637803 123152078 123162339 123165193 123409895 8065702 100825276
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