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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-u.5   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-r.7   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-e.2   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.4.bio   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.4.hor   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.4.lig   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.4.str   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.4.tis   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 bra-r.6   103874988   protein LOW PSII ACCUMULATION 3, chloroplastic 
 bna-r.1   106348901   protein LPA3 
 bna-r.1   106349015   protein LPA3 
 ghi-r.1   107929449   protein LOW PSII ACCUMULATION 3, chloroplastic 
 ghi-r.1   107900665   protein LOW PSII ACCUMULATION 3, chloroplastic 
 cit-r.1   102607123   uncharacterized LOC102607123 
 cit-r.1   102617733   protein LPA3-like 
 gma-u.5   100805878   protein LOW PSII ACCUMULATION 3, chloroplastic 
 gma-u.5   100802995   uncharacterized LOC100802995 
 vvi-u.5   100265501   protein LPA3 
 ppo-u.5   7491892   protein LPA3 
 mtr-u.5   11411101   protein LOW PSII ACCUMULATION 3, chloroplastic 
 sly-u.5   101261055   protein LPA3 
 sot-r.1   102598188   uncharacterized LOC102598188 
 nta-r.1   107821228   protein LPA3-like 
 nta-r.1   107796625   protein LPA3 
 osa-u.5   4328182   protein LPA3 
 zma-u.5   100279074   uncharacterized LOC100279074 
 tae-r.2   123131993   protein LPA3 
 tae-r.2   123136043   protein LPA3 
 tae-r.2   123143528   protein LPA3 
 sbi-r.1   8057504   protein LOW PSII ACCUMULATION 3, chloroplastic 
 bdi-r.1   100843789   protein LOW PSII ACCUMULATION 3, chloroplastic 
 cre-r.1   CHLRE_04g212500v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G48790 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G48790 (ath-m.9 coexpression data)

CoexMap"834937"


athAT5G48790 | Entrez gene ID : 834937      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae sbi bdi cre hvu
Paralog 9 1 2 2 2 2 1 1 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_001332148.1 [sequence] [blastp]
NP_001332149.1 [sequence] [blastp]
NP_568702.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001332148.1)
chlo 9  (predict for NP_001332149.1)
chlo 9  (predict for NP_568702.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001332148.1)
chlo 9  (predict for NP_001332149.1)
chlo 9  (predict for NP_568702.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT5G48790
ath-u.5
for
AT5G48790
ath-r.7
for
AT5G48790
ath-e.2
for
AT5G48790
ath-m.4.bio
for
AT5G48790
ath-m.4.hor
for
AT5G48790
ath-m.4.lig
for
AT5G48790
ath-m.4.str
for
AT5G48790
ath-m.4.tis
for
AT5G48790
bra-r.6
for
103874988
bna-r.1
for
106348901
bna-r.1
for
106349015
ghi-r.1
for
107929449
ghi-r.1
for
107900665
cit-r.1
for
102607123
cit-r.1
for
102617733
gma-u.5
for
100805878
gma-u.5
for
100802995
vvi-u.5
for
100265501
ppo-u.5
for
7491892
mtr-u.5
for
11411101
sly-u.5
for
101261055
sot-r.1
for
102598188
nta-r.1
for
107821228
nta-r.1
for
107796625
osa-u.5
for
4328182
zma-u.5
for
100279074
tae-r.2
for
123131993
tae-r.2
for
123136043
tae-r.2
for
123143528
sbi-r.1
for
8057504
bdi-r.1
for
100843789
cre-r.1
for
CHLRE_04g212500v5


Ortholog ID: 9151
Species ath bra bna bna ghi ghi cit cit cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae sbi bdi cre
Symbol AT5G48790 LOC103874988 LOC106348901 LOC106349015 LOC107929449 LOC107900665 LOC102607123 LOC102617733 LOC102618772 LOC100805878 LOC100802995 LOC100265501 LOC7491892 LOC11411101 LOC101261055 LOC102598188 LOC107821228 LOC107796625 LOC4328182 LOC100279074 LOC123131993 LOC123136043 LOC123143528 LOC8057504 LOC100843789 CHLRE_04g212500v5
Function* LOW PSII ACCUMULATION protein (DUF1995) protein LOW PSII ACCUMULATION 3, chloroplastic protein LPA3 protein LPA3 protein LOW PSII ACCUMULATION 3, chloroplastic protein LOW PSII ACCUMULATION 3, chloroplastic uncharacterized LOC102607123 protein LPA3-like uncharacterized LOC102618772 protein LOW PSII ACCUMULATION 3, chloroplastic uncharacterized LOC100802995 protein LPA3 protein LPA3 protein LOW PSII ACCUMULATION 3, chloroplastic protein LPA3 uncharacterized LOC102598188 protein LPA3-like protein LPA3 protein LPA3 uncharacterized LOC100279074 protein LPA3 protein LPA3 protein LPA3 protein LOW PSII ACCUMULATION 3, chloroplastic protein LOW PSII ACCUMULATION 3, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00860 Porphyrin metabolism 2
bna00260 Glycine, serine and threonine metabolism 2
bna00460 Cyanoamino acid metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 7
bna00630 Glyoxylate and dicarboxylate metabolism 7
bna01200 Carbon metabolism 7
bna00260 Glycine, serine and threonine metabolism 5
bna00460 Cyanoamino acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi00910 Nitrogen metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi00910 Nitrogen metabolism 4
ghi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 2
sly00260 Glycine, serine and threonine metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834937 103874988 106348901 106349015 107929449 107900665 102607123 102617733 102618772 100805878 100802995 100265501 7491892 11411101 101261055 102598188 107821228 107796625 4328182 100279074 123131993 123136043 123143528 8057504 100843789 5724226
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