ATTED-II : GeneCoexpression result

Species	Gene	Description
nta-r.1	107796625	protein LPA3
nta-r.1	107821228	protein LPA3-like
sly-u.5	101261055	protein LPA3
sot-r.1	102598188	uncharacterized LOC102598188
ath-u.5	AT5G48790	LOW PSII ACCUMULATION protein (DUF1995)
gma-u.5	100805878	protein LOW PSII ACCUMULATION 3, chloroplastic
gma-u.5	100802995	uncharacterized LOC100802995
bra-r.6	103874988	protein LOW PSII ACCUMULATION 3, chloroplastic
vvi-u.5	100265501	protein LPA3
ppo-u.5	7491892	protein LPA3
mtr-u.5	11411101	protein LOW PSII ACCUMULATION 3, chloroplastic
ghi-r.1	107929449	protein LOW PSII ACCUMULATION 3, chloroplastic
ghi-r.1	107900665	protein LOW PSII ACCUMULATION 3, chloroplastic
bna-r.1	106349015	protein LPA3
bna-r.1	106348901	protein LPA3
cit-r.1	102618772	uncharacterized LOC102618772
cit-r.1	102617733	protein LPA3-like
osa-u.5	4328182	protein LPA3
zma-u.5	100279074	uncharacterized LOC100279074
tae-r.2	123131993	protein LPA3
tae-r.2	123136043	protein LPA3
tae-r.2	123143528	protein LPA3
sbi-r.1	8057504	protein LOW PSII ACCUMULATION 3, chloroplastic
bdi-r.1	100843789	protein LOW PSII ACCUMULATION 3, chloroplastic
cre-r.1	CHLRE_04g212500v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_016474904.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for XP_016474904.1)

Subcellular
localization
TargetP

chlo 4

(predict for XP_016474904.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107796625	nta-r.1 for 107821228	sly-u.5 for 101261055	sot-r.1 for 102598188	ath-u.5 for AT5G48790	gma-u.5 for 100805878	gma-u.5 for 100802995	bra-r.6 for 103874988	vvi-u.5 for 100265501	ppo-u.5 for 7491892	mtr-u.5 for 11411101	ghi-r.1 for 107929449	ghi-r.1 for 107900665	bna-r.1 for 106349015	bna-r.1 for 106348901	cit-r.1 for 102618772	cit-r.1 for 102617733	osa-u.5 for 4328182	zma-u.5 for 100279074	tae-r.2 for 123131993	tae-r.2 for 123136043	tae-r.2 for 123143528	sbi-r.1 for 8057504	bdi-r.1 for 100843789	cre-r.1 for CHLRE_04g212500v5

Ortholog

Ortholog ID: 9151

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

sbi

bdi

cre

Symbol

Function^*

protein LPA3

protein LPA3-like

protein LPA3

uncharacterized LOC102598188

LOW PSII ACCUMULATION protein (DUF1995)

protein LOW PSII ACCUMULATION 3, chloroplastic

uncharacterized LOC100802995

protein LOW PSII ACCUMULATION 3, chloroplastic

protein LPA3

protein LOW PSII ACCUMULATION 3, chloroplastic

protein LPA3

uncharacterized LOC102618772

protein LPA3-like

uncharacterized LOC102607123

protein LPA3

uncharacterized LOC100279074

protein LPA3

protein LOW PSII ACCUMULATION 3, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	2
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	3
sly00195	Photosynthesis	2
sly00260	Glycine, serine and threonine metabolism	2
sly00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	2
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi00910	Nitrogen metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi00710	Carbon fixation by Calvin cycle	4
ghi01200	Carbon metabolism	4
ghi00910	Nitrogen metabolism	4
ghi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01240	Biosynthesis of cofactors	7
bna00630	Glyoxylate and dicarboxylate metabolism	7
bna01200	Carbon metabolism	7
bna00260	Glycine, serine and threonine metabolism	5
bna00460	Cyanoamino acid metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00906	Carotenoid biosynthesis	2
bna00860	Porphyrin metabolism	2
bna00260	Glycine, serine and threonine metabolism	2
bna00460	Cyanoamino acid metabolism	2
bna00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00900	Terpenoid backbone biosynthesis	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	6
sbi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03060	Protein export	2

Expression

Expression pattern

Entrez Gene ID^*

107796625

107821228

101261055

102598188

834937

100805878

100802995

103874988

100265501

7491892

11411101

107929449

107900665

106349015

106348901

102618772

102617733

102607123

4328182

100279074

123131993

123136043

123143528

8057504

100843789

5724226

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107796625 (nta-r.1 coexpression data)

Top 50 enrichment test to 107796625 (nta-r.1 coexpression data)


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	sbi	bdi	cre	hvu
Paralog	2	1	1	1	2	1	1	1	1	2	2	2	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107796625 (nta-r.1 coexpression data)

Top 50 enrichment test to 107796625 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**