Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SPDS3   spermidine synthase 3 
 ath-u.5   SPDS3   spermidine synthase 3 
 ath-r.7   SPDS3   spermidine synthase 3 
 ath-e.2   SPDS3   spermidine synthase 3 
 ath-m.4.bio   SPDS3   spermidine synthase 3 
 ath-m.4.hor   SPDS3   spermidine synthase 3 
 ath-m.4.lig   SPDS3   spermidine synthase 3 
 ath-m.4.str   SPDS3   spermidine synthase 3 
 ath-m.4.tis   SPDS3   spermidine synthase 3 
 bra-r.6   103852054   spermine synthase 
 bra-r.6   103844792   spermine synthase 
 bna-r.1   106414322   spermine synthase-like 
 bna-r.1   106391720   spermine synthase 
 bna-r.1   106367536   spermine synthase-like 
 ghi-r.1   107947253   spermine synthase 
 ghi-r.1   107910988   spermine synthase 
 ghi-r.1   107908990   spermine synthase 
 cit-r.1   102621922   spermine synthase 
 gma-u.5   100816988   spermine synthase 
 gma-u.5   100815244   spermine synthase 
 vvi-u.5   100232840   spermine synthase 
 ppo-u.5   7465536   spermine synthase 
 ppo-u.5   7489825   spermine synthase 
 mtr-u.5   11417417   spermine synthase 
 mtr-u.5   25482358   spermine synthase 
 sly-u.5   SPM1   SPM1 protein 
 sot-r.1   102582757   spermine synthase 
 nta-r.1   107770315   spermine synthase 
 nta-r.1   107764611   spermine synthase 
 osa-u.5   4341195   spermine synthase 
 osa-u.5   4328910   spermine synthase 
 zma-u.5   732743   spermine synthase1 
 zma-u.5   100282933   spermidine synthase 1 
 zma-u.5   100279222   spermidine synthase 1 
 tae-r.2   123164645   spermine synthase 
 tae-r.2   100682470   spermine synthase 
 tae-r.2   123147926   spermine synthase 
 hvu-r.1   123394905   spermine synthase-like 
 hvu-r.1   123410028   spermine synthase-like 
 sbi-r.1   8058858   spermine synthase 
 sbi-r.1   8085223   spermine synthase 
 sbi-r.1   8078343   spermine synthase 
 bdi-r.1   100836971   spermine synthase 
 bdi-r.1   100831817   spermine synthase 

close


Top 50 coexpressed genes to SPDS3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to SPDS3 (ath-m.9 coexpression data)

CoexMap"835392"


athSPDS3 | Entrez gene ID : 835392      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 2 1 1 2 2 3 3 2 3 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00270 [list] [network] Cysteine and methionine metabolism (125 genes)
ath00330 [list] [network] Arginine and proline metabolism (54 genes)
ath00480 [list] [network] Glutathione metabolism (102 genes)
GO BP
GO:0006597 [list] [network] spermine biosynthetic process  (3 genes)  IMP  
GO:0006596 [list] [network] polyamine biosynthetic process  (12 genes)  IDA  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  TAS  
GO MF
GO:0016768 [list] [network] spermine synthase activity  (2 genes)  IDA IMP  
GO:0004766 [list] [network] spermidine synthase activity  (3 genes)  IDA ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001078748.1 [sequence] [blastp]
NP_001078749.1 [sequence] [blastp]
NP_001190527.1 [sequence] [blastp]
NP_001332707.1 [sequence] [blastp]
NP_568785.1 [sequence] [blastp]
NP_851178.1 [sequence] [blastp]
NP_851179.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_001078748.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_001078749.1)
cyto 7,  nucl 1,  cysk 1,  nucl_plas 1,  E.R._vacu 1  (predict for NP_001190527.1)
cyto 9,  chlo 1  (predict for NP_001332707.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_568785.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_851178.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_851179.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001078748.1)
other 8  (predict for NP_001078749.1)
other 8  (predict for NP_001190527.1)
other 8  (predict for NP_001332707.1)
other 8  (predict for NP_568785.1)
other 8  (predict for NP_851178.1)
other 8  (predict for NP_851179.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SPDS3
ath-u.5
for
SPDS3
ath-r.7
for
SPDS3
ath-e.2
for
SPDS3
ath-m.4.bio
for
SPDS3
ath-m.4.hor
for
SPDS3
ath-m.4.lig
for
SPDS3
ath-m.4.str
for
SPDS3
ath-m.4.tis
for
SPDS3
bra-r.6
for
103852054
bra-r.6
for
103844792
bna-r.1
for
106414322
bna-r.1
for
106391720
bna-r.1
for
106367536
ghi-r.1
for
107947253
ghi-r.1
for
107910988
ghi-r.1
for
107908990
cit-r.1
for
102621922
gma-u.5
for
100816988
gma-u.5
for
100815244
vvi-u.5
for
100232840
ppo-u.5
for
7465536
ppo-u.5
for
7489825
mtr-u.5
for
11417417
mtr-u.5
for
25482358
sly-u.5
for
SPM1
sot-r.1
for
102582757
nta-r.1
for
107770315
nta-r.1
for
107764611
osa-u.5
for
4341195
osa-u.5
for
4328910
zma-u.5
for
732743
zma-u.5
for
100282933
zma-u.5
for
100279222
tae-r.2
for
123164645
tae-r.2
for
100682470
tae-r.2
for
123147926
hvu-r.1
for
123394905
hvu-r.1
for
123410028
sbi-r.1
for
8058858
sbi-r.1
for
8085223
sbi-r.1
for
8078343
bdi-r.1
for
100836971
bdi-r.1
for
100831817


Ortholog ID: 4993
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi
Symbol SPDS3 LOC103852054 LOC103844792 LOC106414322 LOC106391720 LOC106367536 LOC107910988 LOC107908990 LOC107929559 LOC102621922 LOC100816988 LOC100815244 LOC100232840 LOC7465536 LOC7489825 LOC11417417 LOC25482358 SPM1 LOC102582757 LOC107770315 LOC107764611 LOC4341195 LOC4328910 LOC732743 LOC100282933 LOC100279222 LOC123147926 LOC123120961 LOC123103399 LOC123394905 LOC123410028 LOC8058858 LOC8085223 LOC8078343 LOC100836971 LOC100831817
Function* spermidine synthase 3 spermine synthase spermine synthase spermine synthase-like spermine synthase spermine synthase-like spermine synthase spermine synthase spermine synthase-like spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase SPM1 protein spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase1 spermidine synthase 1 spermidine synthase 1 spermine synthase spermine synthase spermine synthase spermine synthase-like spermine synthase-like spermine synthase spermine synthase spermine synthase spermine synthase spermine synthase
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 7
ath00330 Arginine and proline metabolism 3
ath01200 Carbon metabolism 2
ath04141 Protein processing in endoplasmic reticulum 2
ath00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna00270 Cysteine and methionine metabolism 3
bna00330 Arginine and proline metabolism 3
bna00480 Glutathione metabolism 3
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 3
bna00330 Arginine and proline metabolism 3
bna00480 Glutathione metabolism 3
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 3
bna00330 Arginine and proline metabolism 3
bna00480 Glutathione metabolism 3
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
ghi00330 Arginine and proline metabolism 4
ghi00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
ghi00330 Arginine and proline metabolism 4
ghi00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
ghi00330 Arginine and proline metabolism 4
ghi00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 2
gma00330 Arginine and proline metabolism 2
gma00480 Glutathione metabolism 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 2
gma00330 Arginine and proline metabolism 2
gma00480 Glutathione metabolism 2
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00330 Arginine and proline metabolism 2
vvi00360 Phenylalanine metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 4
ppo04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 2
mtr00330 Arginine and proline metabolism 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00330 Arginine and proline metabolism 4
sly00270 Cysteine and methionine metabolism 3
sly00940 Phenylpropanoid biosynthesis 3
sly00941 Flavonoid biosynthesis 2
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 4
sot00330 Arginine and proline metabolism 3
sot00480 Glutathione metabolism 3
sot04122 Sulfur relay system 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00330 Arginine and proline metabolism 2
nta00480 Glutathione metabolism 2
nta00940 Phenylpropanoid biosynthesis 2
nta00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00330 Arginine and proline metabolism 2
nta00480 Glutathione metabolism 2
nta00940 Phenylpropanoid biosynthesis 2
nta00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00270 Cysteine and methionine metabolism 3
osa00480 Glutathione metabolism 3
osa01230 Biosynthesis of amino acids 2
osa01240 Biosynthesis of cofactors 2
osa00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 4
zma03050 Proteasome 3
zma03082 ATP-dependent chromatin remodeling 2
zma03083 Polycomb repressive complex 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00564 Glycerophospholipid metabolism 3
zma04070 Phosphatidylinositol signaling system 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00052 Galactose metabolism 3
tae00500 Starch and sucrose metabolism 3
tae00270 Cysteine and methionine metabolism 3
tae00330 Arginine and proline metabolism 3
tae00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00330 Arginine and proline metabolism 3
tae00480 Glutathione metabolism 3
tae03082 ATP-dependent chromatin remodeling 3
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00620 Pyruvate metabolism 3
tae00270 Cysteine and methionine metabolism 3
tae00330 Arginine and proline metabolism 3
tae00480 Glutathione metabolism 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00250 Alanine, aspartate and glutamate metabolism 2
hvu00260 Glycine, serine and threonine metabolism 2
hvu00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00564 Glycerophospholipid metabolism 2
sbi04070 Phosphatidylinositol signaling system 2
sbi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00270 Cysteine and methionine metabolism 2
sbi00330 Arginine and proline metabolism 2
sbi00480 Glutathione metabolism 2
sbi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00270 Cysteine and methionine metabolism 3
sbi01240 Biosynthesis of cofactors 3
sbi00330 Arginine and proline metabolism 2
sbi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 6
bdi01200 Carbon metabolism 6
bdi00710 Carbon fixation by Calvin cycle 3
bdi00270 Cysteine and methionine metabolism 2
bdi04146 Peroxisome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835392 103852054 103844792 106414322 106391720 106367536 107910988 107908990 107929559 102621922 100816988 100815244 100232840 7465536 7489825 11417417 25482358 543894 102582757 107770315 107764611 4341195 4328910 732743 100282933 100279222 123147926 123120961 123103399 123394905 123410028 8058858 8085223 8078343 100836971 100831817
The preparation time of this page was 0.1 [sec].