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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   LHCB3   light-harvesting chlorophyll B-binding protein 3 
 ath-u.5   LHCB3   light-harvesting chlorophyll B-binding protein 3 
 ath-r.7   LHCB3   light-harvesting chlorophyll B-binding protein 3 
 ath-e.2   LHCB3   light-harvesting chlorophyll B-binding protein 3 
 ath-m.4.bio   LHCB3   light-harvesting chlorophyll B-binding protein 3 
 ath-m.4.hor   LHCB3   light-harvesting chlorophyll B-binding protein 3 
 ath-m.4.lig   LHCB3   light-harvesting chlorophyll B-binding protein 3 
 ath-m.4.str   LHCB3   light-harvesting chlorophyll B-binding protein 3 
 ath-m.4.tis   LHCB3   light-harvesting chlorophyll B-binding protein 3 
 bra-r.6   103844887   chlorophyll a-b binding protein 3, chloroplastic 
 bna-r.1   106380936   chlorophyll a-b binding protein 3, chloroplastic 
 bna-r.1   106434505   chlorophyll a-b binding protein 3, chloroplastic 
 bna-r.1   111198551   chlorophyll a-b binding protein 3, chloroplastic 
 ghi-r.1   107917723   chlorophyll a-b binding protein 13, chloroplastic 
 ghi-r.1   107948620   chlorophyll a-b binding protein 13, chloroplastic 
 ghi-r.1   107948618   chlorophyll a-b binding protein 13, chloroplastic 
 cit-r.1   102625194   chlorophyll a-b binding protein 13, chloroplastic 
 gma-u.5   100790960   chlorophyll a-b binding protein 13, chloroplastic-like 
 gma-u.5   100779387   chlorophyll a-b binding protein 13, chloroplastic-like 
 vvi-u.5   100260599   chlorophyll a-b binding protein 13, chloroplastic 
 ppo-u.5   18095653   chlorophyll a-b binding protein 13, chloroplastic 
 mtr-u.5   11405314   chlorophyll a-b binding protein 13, chloroplastic 
 sly-u.5   101268123   chlorophyll a-b binding protein 13, chloroplastic-like 
 sly-u.5   CAB13   chlorophyll a-b binding protein 13, chloroplastic 
 sot-r.1   102586284   chlorophyll a-b binding protein 13, chloroplastic 
 sot-r.1   102584787   chlorophyll a-b binding protein 13, chloroplastic 
 nta-r.1   107830195   chlorophyll a-b binding protein 13, chloroplastic 
 nta-r.1   107793205   chlorophyll a-b binding protein 13, chloroplastic 
 nta-r.1   107765079   chlorophyll a-b binding protein 13, chloroplastic-like 
 osa-u.5   4343604   chlorophyll a-b binding protein of LHCII type III, chloroplastic 
 zma-u.5   100284154   chlorophyll a-b binding protein of LHCII type III 
 tae-r.2   123188262   chlorophyll a-b binding protein of LHCII type III, chloroplastic 
 tae-r.2   123183260   chlorophyll a-b binding protein of LHCII type III, chloroplastic 
 tae-r.2   123148365   chlorophyll a-b binding protein of LHCII type III, chloroplastic 
 hvu-r.1   123425700   chlorophyll a-b binding protein of LHCII type III, chloroplastic 
 sbi-r.1   8081748   chlorophyll a-b binding protein of LHCII type III, chloroplastic 
 bdi-r.1   100836842   chlorophyll a-b binding protein of LHCII type III, chloroplastic 

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Top 50 coexpressed genes to LHCB3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LHCB3 (ath-m.9 coexpression data)

CoexMap"835515"


athLHCB3 | Entrez gene ID : 835515      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 3 1 2 1 1 1 2 2 3 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
GO BP
GO:0009769 [list] [network] photosynthesis, light harvesting in photosystem II  (6 genes)  IMP  
GO:0009635 [list] [network] response to herbicide  (11 genes)  IEP  
GO:0009644 [list] [network] response to high light intensity  (71 genes)  IEP  
GO:0010119 [list] [network] regulation of stomatal movement  (113 genes)  IMP  
GO:0015979 [list] [network] photosynthesis  (154 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IMP  
GO CC
GO:0009517 [list] [network] PSII associated light-harvesting complex II  (7 genes)  IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0042651 [list] [network] thylakoid membrane  (348 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_200238.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 1,  nucl 1,  extr 1,  E.R. 1,  cyto_mito 1,  mito_plas 1  (predict for NP_200238.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_200238.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
LHCB3
ath-u.5
for
LHCB3
ath-r.7
for
LHCB3
ath-e.2
for
LHCB3
ath-m.4.bio
for
LHCB3
ath-m.4.hor
for
LHCB3
ath-m.4.lig
for
LHCB3
ath-m.4.str
for
LHCB3
ath-m.4.tis
for
LHCB3
bra-r.6
for
103844887
bna-r.1
for
106380936
bna-r.1
for
106434505
bna-r.1
for
111198551
ghi-r.1
for
107917723
ghi-r.1
for
107948620
ghi-r.1
for
107948618
cit-r.1
for
102625194
gma-u.5
for
100790960
gma-u.5
for
100779387
vvi-u.5
for
100260599
ppo-u.5
for
18095653
mtr-u.5
for
11405314
sly-u.5
for
101268123
sly-u.5
for
CAB13
sot-r.1
for
102586284
sot-r.1
for
102584787
nta-r.1
for
107830195
nta-r.1
for
107793205
nta-r.1
for
107765079
osa-u.5
for
4343604
zma-u.5
for
100284154
tae-r.2
for
123188262
tae-r.2
for
123183260
tae-r.2
for
123148365
hvu-r.1
for
123425700
sbi-r.1
for
8081748
bdi-r.1
for
100836842


Ortholog ID: 6998
Species ath bra bna bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol LHCB3 LOC103844887 LOC106380936 LOC106434505 LOC111198551 LOC107948620 LOC107948618 LOC107903531 LOC102625194 LOC100790960 LOC100779387 LOC100260599 LOC18095653 LOC11405314 LOC101268123 CAB13 LOC102586284 LOC102584787 LOC107793205 LOC107765079 LOC107790089 LOC4343604 LOC100284154 LOC123188262 LOC123183260 LOC123148365 LOC123425700 LOC8081748 LOC100836842
Function* light-harvesting chlorophyll B-binding protein 3 chlorophyll a-b binding protein 3, chloroplastic chlorophyll a-b binding protein 3, chloroplastic chlorophyll a-b binding protein 3, chloroplastic chlorophyll a-b binding protein 3, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic-like chlorophyll a-b binding protein 13, chloroplastic-like chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic-like chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein 13, chloroplastic-like chlorophyll a-b binding protein 13, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein of LHCII type III chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic chlorophyll a-b binding protein of LHCII type III, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 10
ath00195 Photosynthesis 7
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 12
bra00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 6
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00196 Photosynthesis - antenna proteins 10
vvi00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 10
ppo00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 7
mtr00195 Photosynthesis 5
mtr00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 17
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 12
sly00860 Porphyrin metabolism 3
sly00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 15
sot00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 14
sot00860 Porphyrin metabolism 4
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 10
osa00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 16
zma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 12
tae00860 Porphyrin metabolism 3
tae00053 Ascorbate and aldarate metabolism 2
tae00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 13
tae00195 Photosynthesis 6
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 11
hvu00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 13
sbi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 14
bdi00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835515 103844887 106380936 106434505 111198551 107948620 107948618 107903531 102625194 100790960 100779387 100260599 18095653 11405314 101268123 101243766 102586284 102584787 107793205 107765079 107790089 4343604 100284154 123188262 123183260 123148365 123425700 8081748 100836842
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