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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-u.5   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-r.7   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-e.2   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.bio   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.hor   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.lig   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.str   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.tis   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-u.5   LARP1c   winged-helix DNA-binding transcription factor family protein 
 bra-r.6   103834922   la-related protein 1C 
 bra-r.6   103872339   la-related protein 1C 
 bna-r.1   106451458   la-related protein 1C 
 bna-r.1   125583763   la-related protein 1C-like 
 bna-r.1   111207847   la-related protein 1C 
 ghi-r.1   107909476   la-related protein 1C 
 ghi-r.1   107909477   la-related protein 1C 
 ghi-r.1   107912037   la-related protein 1C 
 cit-r.1   102616770   la-related protein 1C-like 
 cit-r.1   102610519   la-related protein 1C 
 gma-u.5   100803372   la-related protein 1C 
 gma-u.5   100794531   la-related protein 1B 
 gma-u.5   100792549   la-related protein 1C 
 vvi-u.5   100243783   la-related protein 1C 
 vvi-u.5   100243746   la-related protein 1C 
 ppo-u.5   18099146   la-related protein 1C 
 ppo-u.5   7462584   la-related protein 1C 
 ppo-u.5   7493989   la-related protein 1B 
 mtr-u.5   11418763   la-related protein 1C 
 mtr-u.5   11409237   la-related protein 1B 
 mtr-u.5   11444870   la-related protein 1C 
 sly-u.5   101255266   la-related protein 1C 
 sly-u.5   104645983   la-related protein 1C 
 sly-u.5   101244368   LA motif RNA-binding domain-containing protein 
 sot-r.1   102587120   la-related protein 1C-like 
 sot-r.1   102588104   la-related protein 1C-like 
 sot-r.1   102606259   la-related protein 1C-like 
 nta-r.1   107807801   la-related protein 1C-like 
 nta-r.1   107807802   la-related protein 1C-like 
 nta-r.1   107803035   la-related protein 1C 
 osa-u.5   4331669   la-related protein 1C 
 zma-u.5   100273740   uncharacterized LOC100273740 
 zma-u.5   103631737   la-related protein 1B 
 tae-r.2   123098457   la-related protein 1B 
 tae-r.2   123093196   la-related protein 1B 
 tae-r.2   123084897   la-related protein 1B 
 hvu-r.1   123449478   la-related protein 1B-like 
 sbi-r.1   8085462   la-related protein 1B 
 bdi-r.1   100843807   la-related protein 1B 

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Top 50 coexpressed genes to LARP1b (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LARP1b (ath-m.9 coexpression data)

CoexMap"836742"


athLARP1b | Entrez gene ID : 836742      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 2 3 2 3 3 3 3 3 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010150 [list] [network] leaf senescence  (128 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_001330746.1 [sequence] [blastp]
NP_201411.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_001330746.1)
nucl 9,  cyto_nucl 5  (predict for NP_201411.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001330746.1)
chlo 7  (predict for NP_201411.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
LARP1b
ath-u.5
for
LARP1b
ath-r.7
for
LARP1b
ath-e.2
for
LARP1b
ath-m.4.bio
for
LARP1b
ath-m.4.hor
for
LARP1b
ath-m.4.lig
for
LARP1b
ath-m.4.str
for
LARP1b
ath-m.4.tis
for
LARP1b
ath-u.5
for
LARP1c
bra-r.6
for
103834922
bra-r.6
for
103872339
bna-r.1
for
106451458
bna-r.1
for
125583763
bna-r.1
for
111207847
ghi-r.1
for
107909476
ghi-r.1
for
107909477
ghi-r.1
for
107912037
cit-r.1
for
102616770
cit-r.1
for
102610519
gma-u.5
for
100803372
gma-u.5
for
100794531
gma-u.5
for
100792549
vvi-u.5
for
100243783
vvi-u.5
for
100243746
ppo-u.5
for
18099146
ppo-u.5
for
7462584
ppo-u.5
for
7493989
mtr-u.5
for
11418763
mtr-u.5
for
11409237
mtr-u.5
for
11444870
sly-u.5
for
101255266
sly-u.5
for
104645983
sly-u.5
for
101244368
sot-r.1
for
102587120
sot-r.1
for
102588104
sot-r.1
for
102606259
nta-r.1
for
107807801
nta-r.1
for
107807802
nta-r.1
for
107803035
osa-u.5
for
4331669
zma-u.5
for
100273740
zma-u.5
for
103631737
tae-r.2
for
123098457
tae-r.2
for
123093196
tae-r.2
for
123084897
hvu-r.1
for
123449478
sbi-r.1
for
8085462
bdi-r.1
for
100843807


Ortholog ID: 1875
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LARP1b LARP1c LOC103834922 LOC103872339 LOC103862438 LOC106451458 LOC106392325 LOC106352459 LOC107923978 LOC107943502 LOC107943504 LOC102616770 LOC102610519 LOC100803372 LOC100811819 LOC100785504 LOC100243783 LOC100243746 LOC18099146 LOC7462584 LOC7493989 LOC11409237 LOC11444870 LOC11427406 LOC101255266 LOC104645983 LOC101244368 LOC102588104 LOC102606259 LOC102587450 LOC107807801 LOC107807802 LOC107808891 LOC4331669 LOC100273740 LOC103631737 LOC123098457 LOC123093196 LOC123084897 LOC123449478 LOC8085462 LOC100843807
Function* winged-helix DNA-binding transcription factor family protein winged-helix DNA-binding transcription factor family protein la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1B la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C-like la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1B la-related protein 1B la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C LA motif RNA-binding domain-containing protein la-related protein 1C-like la-related protein 1C-like la-related protein 1C-like la-related protein 1C-like la-related protein 1C-like la-related protein 1C la-related protein 1C uncharacterized LOC100273740 la-related protein 1B la-related protein 1B la-related protein 1B la-related protein 1B la-related protein 1B-like la-related protein 1B la-related protein 1B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna04382 Cornified envelope formation 6
bna04144 Endocytosis 4
bna05100 Bacterial invasion of epithelial cells 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00053 Ascorbate and aldarate metabolism 3
ghi00520 Amino sugar and nucleotide sugar metabolism 3
ghi01240 Biosynthesis of cofactors 3
ghi01250 Biosynthesis of nucleotide sugars 3
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 4
ghi01232 Nucleotide metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 3
ghi01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 14
gma00510 N-Glycan biosynthesis 13
gma00513 Various types of N-glycan biosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00510 N-Glycan biosynthesis 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 5
tae00020 Citrate cycle (TCA cycle) 4
tae00785 Lipoic acid metabolism 4
tae01210 2-Oxocarboxylic acid metabolism 4
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00620 Pyruvate metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03015 mRNA surveillance pathway 2
sbi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836742 829743 103834922 103872339 103862438 106451458 106392325 106352459 107923978 107943502 107943504 102616770 102610519 100803372 100811819 100785504 100243783 100243746 18099146 7462584 7493989 11409237 11444870 11427406 101255266 104645983 101244368 102588104 102606259 102587450 107807801 107807802 107808891 4331669 100273740 103631737 123098457 123093196 123084897 123449478 8085462 100843807
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