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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-r.7   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.9   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-e.2   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.bio   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.hor   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.lig   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.str   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.tis   LARP1b   winged-helix DNA-binding transcription factor family protein 
 ath-u.5   LARP1c   winged-helix DNA-binding transcription factor family protein 
 gma-u.5   100803372   la-related protein 1C 
 gma-u.5   100794531   la-related protein 1B 
 gma-u.5   100792549   la-related protein 1C 
 vvi-u.5   100243783   la-related protein 1C 
 vvi-u.5   100243746   la-related protein 1C 
 ppo-u.5   18099146   la-related protein 1C 
 ppo-u.5   7462584   la-related protein 1C 
 ppo-u.5   7493989   la-related protein 1B 
 mtr-u.5   11418763   la-related protein 1C 
 mtr-u.5   11409237   la-related protein 1B 
 mtr-u.5   11444870   la-related protein 1C 
 sly-u.5   101255266   la-related protein 1C 
 sly-u.5   104645983   la-related protein 1C 
 sly-u.5   101244368   LA motif RNA-binding domain-containing protein 
 osa-u.5   4331669   la-related protein 1C 
 zma-u.5   100273740   uncharacterized LOC100273740 
 zma-u.5   103631737   la-related protein 1B 

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Top 50 coexpressed genes to LARP1b (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LARP1b (ath-u.5 coexpression data)

CoexMap"836742"


athLARP1b | Entrez gene ID : 836742      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 10 3 2 3 3 3 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010150 [list] [network] leaf senescence  (128 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_001330746.1 [sequence] [blastp]
NP_201411.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_001330746.1)
nucl 9,  cyto_nucl 5  (predict for NP_201411.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001330746.1)
chlo 7  (predict for NP_201411.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LARP1b
ath-r.7
for
LARP1b
ath-m.9
for
LARP1b
ath-e.2
for
LARP1b
ath-m.4.bio
for
LARP1b
ath-m.4.hor
for
LARP1b
ath-m.4.lig
for
LARP1b
ath-m.4.str
for
LARP1b
ath-m.4.tis
for
LARP1b
ath-u.5
for
LARP1c
gma-u.5
for
100803372
gma-u.5
for
100794531
gma-u.5
for
100792549
vvi-u.5
for
100243783
vvi-u.5
for
100243746
ppo-u.5
for
18099146
ppo-u.5
for
7462584
ppo-u.5
for
7493989
mtr-u.5
for
11418763
mtr-u.5
for
11409237
mtr-u.5
for
11444870
sly-u.5
for
101255266
sly-u.5
for
104645983
sly-u.5
for
101244368
osa-u.5
for
4331669
zma-u.5
for
100273740
zma-u.5
for
103631737


Ortholog ID: 1875
Species ath ath bra bra bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae hvu sbi bdi
Symbol LARP1c LARP1b LOC103834922 LOC103872339 LOC106451458 LOC106392325 LOC107923978 LOC107943502 LOC102610519 LOC102616770 LOC100811819 LOC100803372 LOC100243746 LOC100243783 LOC7493989 LOC7462584 LOC11427406 LOC11409237 LOC104645983 LOC101255266 LOC102587450 LOC102606259 LOC107807801 LOC107807802 LOC4331669 LOC100273740 LOC103631737 LOC123098457 LOC123084897 LOC123449478 LOC8085462 LOC100843807
Function* winged-helix DNA-binding transcription factor family protein winged-helix DNA-binding transcription factor family protein la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1B la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C-like la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1B la-related protein 1C la-related protein 1C la-related protein 1B la-related protein 1C la-related protein 1C la-related protein 1C-like la-related protein 1C-like la-related protein 1C-like la-related protein 1C-like la-related protein 1C uncharacterized LOC100273740 la-related protein 1B la-related protein 1B la-related protein 1B la-related protein 1B-like la-related protein 1B la-related protein 1B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00053 Ascorbate and aldarate metabolism 3
ghi00520 Amino sugar and nucleotide sugar metabolism 3
ghi01240 Biosynthesis of cofactors 3
ghi01250 Biosynthesis of nucleotide sugars 3
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 4
ghi01232 Nucleotide metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 5
tae00020 Citrate cycle (TCA cycle) 4
tae00785 Lipoic acid metabolism 4
tae01210 2-Oxocarboxylic acid metabolism 4
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00620 Pyruvate metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03015 mRNA surveillance pathway 2
sbi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829743 836742 103834922 103872339 106451458 106392325 107923978 107943502 102610519 102616770 100811819 100803372 100243746 100243783 7493989 7462584 11427406 11409237 104645983 101255266 102587450 102606259 107807801 107807802 4331669 100273740 103631737 123098457 123084897 123449478 8085462 100843807
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