Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   RBP47C'   RNA-binding protein 47C' 
 ath-u.5   RBP47B   RNA-binding protein 47B 
 ath-u.5   ATRBP45C   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103869491   polyadenylate-binding protein RBP47B 
 bra-r.6   103866749   polyadenylate-binding protein RBP45C 
 bra-r.6   103868789   polyadenylate-binding protein RBP47A 
 bna-r.1   106414484   polyadenylate-binding protein RBP45C-like 
 bna-r.1   125608524   polyadenylate-binding protein RBP47B-like 
 bna-r.1   125584144   polyadenylate-binding protein RBP47B'-like 
 ghi-r.1   107933435   polyadenylate-binding protein RBP45C 
 ghi-r.1   107935615   polyadenylate-binding protein RBP47B 
 ghi-r.1   107958098   polyadenylate-binding protein RBP47 
 cit-r.1   102622145   polyadenylate-binding protein RBP47-like 
 cit-r.1   102613416   polyadenylate-binding protein RBP45 
 cit-r.1   102613263   polyadenylate-binding protein RBP45C 
 gma-u.5   100801446   polyadenylate-binding protein RBP47C 
 gma-u.5   100801562   polyadenylate-binding protein RBP45 
 gma-u.5   100813616   polyadenylate-binding protein RBP47B' 
 vvi-u.5   100243203   polyadenylate-binding protein RBP47B' 
 vvi-u.5   100250363   polyadenylate-binding protein RBP45 
 ppo-u.5   18097813   polyadenylate-binding protein RBP47 
 ppo-u.5   18104937   polyadenylate-binding protein RBP47 
 ppo-u.5   7482317   polyadenylate-binding protein RBP47B' 
 mtr-u.5   25482078   polyadenylate-binding protein RBP47C 
 mtr-u.5   25486138   polyadenylate-binding protein RBP45 
 mtr-u.5   11446957   polyadenylate-binding protein RBP47 
 sly-u.5   101261707   polyadenylate-binding protein RBP47 
 sly-u.5   101257903   polyadenylate-binding protein RBP45-like 
 sly-u.5   101255948   polyadenylate-binding protein RBP45 
 sot-r.1   102577643   DNA-binding protein-like 
 sot-r.1   102583610   polyadenylate-binding protein RBP45 
 sot-r.1   102590727   polyadenylate-binding protein RBP45-like 
 nta-r.1   107826742   polyadenylate-binding protein RBP45-like 
 nta-r.1   107789104   polyadenylate-binding protein RBP45 
 nta-r.1   107798870   polyadenylate-binding protein RBP47C'-like 
 osa-u.5   9270800   RNA-binding protein L-like 
 osa-u.5   4333283   RNA-binding protein L-like 
 osa-u.5   4344847   RNA-binding protein L-like 
 zma-u.5   100274401   Polyadenylate-binding protein RBP45C 
 zma-u.5   100278143   uncharacterized LOC100278143 
 zma-u.5   100285821   uncharacterized LOC100285821 
 tae-r.2   123188425   polyadenylate-binding protein RBP45 
 tae-r.2   123189357   polyadenylate-binding protein RBP47 
 tae-r.2   123144572   polyadenylate-binding protein RBP47 
 hvu-r.1   123425891   RNA-binding protein L-like 
 hvu-r.1   123398803   polyadenylate-binding protein RBP47-like 
 hvu-r.1   123449576   polyadenylate-binding protein RBP47B' 
 sbi-r.1   8066818   polyadenylate-binding protein RBP45 
 sbi-r.1   8057438   polyadenylate-binding protein RBP47 
 sbi-r.1   8080123   polyadenylate-binding protein RBP45 
 bdi-r.1   100825555   polyadenylate-binding protein RBP47 
 bdi-r.1   100827124   polyadenylate-binding protein RBP45 
 bdi-r.1   100831361   polyadenylate-binding protein RBP47C' 
 cre-r.1   CHLRE_16g652900v5   uncharacterized protein 

close


Top 50 coexpressed genes to RBP45B (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to RBP45B (ath-m.9 coexpression data)

CoexMap"837708"


athRBP45B | Entrez gene ID : 837708      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 3 3 2 3 3 3 3 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010193 [list] [network] response to ozone  (36 genes)  IEP  
GO CC
GO:0010494 [list] [network] cytoplasmic stress granule  (143 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISS  
GO MF
GO:0008143 [list] [network] poly(A) binding  (12 genes)  ISS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
GO:0003723 [list] [network] RNA binding  (1764 genes)  IDA  
Protein NP_172630.1 [sequence] [blastp]
NP_849641.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto_nucl 3,  pero 2,  extr 1,  cyto 1  (predict for NP_172630.1)
cyto 3,  nucl 2,  pero 2,  extr 1,  cyto_plas 1  (predict for NP_849641.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for NP_172630.1)
other 4,  mito 3  (predict for NP_849641.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RBP45B
ath-u.5
for
RBP45B
ath-r.7
for
RBP45B
ath-e.2
for
RBP45B
ath-m.4.bio
for
RBP45B
ath-m.4.hor
for
RBP45B
ath-m.4.lig
for
RBP45B
ath-m.4.str
for
RBP45B
ath-m.4.tis
for
RBP45B
ath-u.5
for
RBP47C'
ath-u.5
for
RBP47B
ath-u.5
for
ATRBP45C
bra-r.6
for
103869491
bra-r.6
for
103866749
bra-r.6
for
103868789
bna-r.1
for
106414484
bna-r.1
for
125608524
bna-r.1
for
125584144
ghi-r.1
for
107933435
ghi-r.1
for
107935615
ghi-r.1
for
107958098
cit-r.1
for
102622145
cit-r.1
for
102613416
cit-r.1
for
102613263
gma-u.5
for
100801446
gma-u.5
for
100801562
gma-u.5
for
100813616
vvi-u.5
for
100243203
vvi-u.5
for
100250363
ppo-u.5
for
18097813
ppo-u.5
for
18104937
ppo-u.5
for
7482317
mtr-u.5
for
25482078
mtr-u.5
for
25486138
mtr-u.5
for
11446957
sly-u.5
for
101261707
sly-u.5
for
101257903
sly-u.5
for
101255948
sot-r.1
for
102577643
sot-r.1
for
102583610
sot-r.1
for
102590727
nta-r.1
for
107826742
nta-r.1
for
107789104
nta-r.1
for
107798870
osa-u.5
for
9270800
osa-u.5
for
4333283
osa-u.5
for
4344847
zma-u.5
for
100274401
zma-u.5
for
100278143
zma-u.5
for
100285821
tae-r.2
for
123188425
tae-r.2
for
123189357
tae-r.2
for
123144572
hvu-r.1
for
123425891
hvu-r.1
for
123398803
hvu-r.1
for
123449576
sbi-r.1
for
8066818
sbi-r.1
for
8057438
sbi-r.1
for
8080123
bdi-r.1
for
100825555
bdi-r.1
for
100827124
bdi-r.1
for
100831361
cre-r.1
for
CHLRE_16g652900v5


Ortholog ID: 192
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol RBP45B ATRBP45C AT5G19350 LOC103869491 LOC103839291 LOC103837516 LOC125584144 LOC125609228 LOC106410514 LOC107926276 LOC107920130 LOC107942660 LOC102613263 LOC102608432 LOC100801562 LOC100813616 LOC100785454 LOC100243203 LOC100257353 LOC18097813 LOC18104937 LOC18095820 LOC25482078 LOC25486138 LOC11446957 LOC101255948 LOC101254975 LOC101250426 LOC102583610 LOC102590727 LOC102595348 LOC107827228 LOC107831077 LOC107774489 LOC9270800 LOC4344847 LOC4331788 LOC103628560 LOC100273450 LOC103653663 LOC123052545 LOC123104011 LOC123112245 LOC123425891 LOC123427909 LOC123426861 LOC8066818 LOC8057438 LOC8063033 LOC100831361 LOC100840332 LOC100845432 CHLRE_16g652900v5
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP47B'-like polyadenylate-binding protein RBP47A-like polyadenylate-binding protein RBP45C-like polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47B' polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP47B' polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45-like polyadenylate-binding protein RBP47-like polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 RNA-binding protein L-like RNA-binding protein L-like polyadenylate-binding protein RBP47B' polyadenylate-binding protein RBP47A uncharacterized LOC100273450 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47 RNA-binding protein L-like RNA-binding protein L-like polyadenylate-binding protein RBP47-like polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47C' polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47B' uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00240 Pyrimidine metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03040 Spliceosome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
vvi03040 Spliceosome 2
vvi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr03015 mRNA surveillance pathway 2
mtr03040 Spliceosome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 2
sly04141 Protein processing in endoplasmic reticulum 2
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03015 mRNA surveillance pathway 3
sly03250 Viral life cycle - HIV-1 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 4
sly03040 Spliceosome 3
sly04141 Protein processing in endoplasmic reticulum 3
sly00290 Valine, leucine and isoleucine biosynthesis 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 2
sot03040 Spliceosome 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot03013 Nucleocytoplasmic transport 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 3
osa03050 Proteasome 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04712 Circadian rhythm - plant 2
zma00730 Thiamine metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 3
bdi03040 Spliceosome 3
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 3
cre04120 Ubiquitin mediated proteolysis 2
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837708 828808 832055 103869491 103839291 103837516 125584144 125609228 106410514 107926276 107920130 107942660 102613263 102608432 100801562 100813616 100785454 100243203 100257353 18097813 18104937 18095820 25482078 25486138 11446957 101255948 101254975 101250426 102583610 102590727 102595348 107827228 107831077 107774489 9270800 4344847 4331788 103628560 100273450 103653663 123052545 123104011 123112245 123425891 123427909 123426861 8066818 8057438 8063033 100831361 100840332 100845432 66056515
The preparation time of this page was 0.2 [sec].