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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   CLPP6   CLP protease proteolytic subunit 6 
 ath-u.5   CLPP6   CLP protease proteolytic subunit 6 
 ath-r.7   CLPP6   CLP protease proteolytic subunit 6 
 ath-e.2   CLPP6   CLP protease proteolytic subunit 6 
 ath-m.4.bio   CLPP6   CLP protease proteolytic subunit 6 
 ath-m.4.hor   CLPP6   CLP protease proteolytic subunit 6 
 ath-m.4.lig   CLPP6   CLP protease proteolytic subunit 6 
 ath-m.4.str   CLPP6   CLP protease proteolytic subunit 6 
 ath-m.4.tis   CLPP6   CLP protease proteolytic subunit 6 
 bra-r.6   103843228   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 bra-r.6   103836208   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 bna-r.1   106362167   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 bna-r.1   106415400   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 bna-r.1   106435816   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 ghi-r.1   107886985   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 ghi-r.1   107945171   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 ghi-r.1   107944124   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 cit-r.1   102614581   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 gma-u.5   100799710   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 gma-u.5   100796744   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 vvi-u.5   100852857   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 ppo-u.5   7469984   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 ppo-u.5   7464042   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 mtr-u.5   11412973   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 sly-u.5   543966   clp-like energy-dependent protease 
 sot-r.1   102589998   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 nta-r.1   107811365   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like 
 nta-r.1   107801881   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like 
 osa-u.5   4333096   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 zma-u.5   100272787   uncharacterized LOC100272787 
 tae-r.2   123085952   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 tae-r.2   100415860   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 tae-r.2   123097306   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 hvu-r.1   123448508   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 sbi-r.1   8056407   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 bdi-r.1   100832682   ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 
 cre-r.1   CHLRE_06g299650v5   uncharacterized protein 

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Top 50 coexpressed genes to CLPP6 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CLPP6 (ath-m.9 coexpression data)

CoexMap"837719"


athCLPP6 | Entrez gene ID : 837719      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0015979 [list] [network] photosynthesis  (154 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO CC
GO:0009840 [list] [network] chloroplastic endopeptidase Clp complex  (8 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009532 [list] [network] plastid stroma  (704 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
Protein NP_001184966.1 [sequence] [blastp]
NP_563893.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 5,  chlo_mito 5  (predict for NP_001184966.1)
mito 6,  chlo 4  (predict for NP_563893.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001184966.1)
chlo 9,  mito 3  (predict for NP_563893.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
CLPP6
ath-u.5
for
CLPP6
ath-r.7
for
CLPP6
ath-e.2
for
CLPP6
ath-m.4.bio
for
CLPP6
ath-m.4.hor
for
CLPP6
ath-m.4.lig
for
CLPP6
ath-m.4.str
for
CLPP6
ath-m.4.tis
for
CLPP6
bra-r.6
for
103843228
bra-r.6
for
103836208
bna-r.1
for
106362167
bna-r.1
for
106415400
bna-r.1
for
106435816
ghi-r.1
for
107886985
ghi-r.1
for
107945171
ghi-r.1
for
107944124
cit-r.1
for
102614581
gma-u.5
for
100799710
gma-u.5
for
100796744
vvi-u.5
for
100852857
ppo-u.5
for
7469984
ppo-u.5
for
7464042
mtr-u.5
for
11412973
sly-u.5
for
543966
sot-r.1
for
102589998
nta-r.1
for
107811365
nta-r.1
for
107801881
osa-u.5
for
4333096
zma-u.5
for
100272787
tae-r.2
for
123085952
tae-r.2
for
100415860
tae-r.2
for
123097306
hvu-r.1
for
123448508
sbi-r.1
for
8056407
bdi-r.1
for
100832682
cre-r.1
for
CHLRE_06g299650v5


Ortholog ID: 7791
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol CLPP6 LOC103843228 LOC103836208 LOC106362167 LOC106415400 LOC106435816 LOC107886985 LOC107944124 LOC107898767 LOC102614581 LOC100799710 LOC100796744 LOC100852857 LOC7469984 LOC7464042 LOC11412973 LOC543966 LOC102589998 LOC107811365 LOC107801881 LOC4333096 LOC100272787 LOC123085952 LOC100415860 LOC123097306 LOC123448508 LOC8056407 LOC100832682 CHLRE_06g299650v5
Function* CLP protease proteolytic subunit 6 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic clp-like energy-dependent protease ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like ATP-dependent Clp protease proteolytic subunit 6, chloroplastic uncharacterized LOC100272787 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic ATP-dependent Clp protease proteolytic subunit 6, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
bra03010 Ribosome 2
bra00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00450 Selenocompound metabolism 2
ghi03010 Ribosome 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00350 Tyrosine metabolism 2
ghi00360 Phenylalanine metabolism 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 4
cit00900 Terpenoid backbone biosynthesis 2
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00785 Lipoic acid metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
vvi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo03010 Ribosome 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
zma03060 Protein export 3
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 3
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi00561 Glycerolipid metabolism 2
bdi00566 Sulfoquinovose metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837719 103843228 103836208 106362167 106415400 106435816 107886985 107944124 107898767 102614581 100799710 100796744 100852857 7469984 7464042 11412973 543966 102589998 107811365 107801881 4333096 100272787 123085952 100415860 123097306 123448508 8056407 100832682 5716994
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