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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   HMGA   high mobility group A 
 ath-u.5   HMGA   high mobility group A 
 ath-r.7   HMGA   high mobility group A 
 ath-e.2   HMGA   high mobility group A 
 ath-m.4.bio   HMGA   high mobility group A 
 ath-m.4.hor   HMGA   high mobility group A 
 ath-m.4.lig   HMGA   high mobility group A 
 ath-m.4.str   HMGA   high mobility group A 
 ath-m.4.tis   HMGA   high mobility group A 
 bra-r.6   103827568   HMG-Y-related protein A 
 bra-r.6   103854054   HMG-Y-related protein A 
 bna-r.1   106447960   HMG-Y-related protein A 
 bna-r.1   106406902   HMG-Y-related protein A-like 
 bna-r.1   106389164   HMG-Y-related protein A-like 
 ghi-r.1   107946285   HMG-Y-related protein B 
 ghi-r.1   107936810   HMG-Y-related protein A 
 ghi-r.1   107946286   HMG-Y-related protein A 
 cit-r.1   102619719   HMG-Y-related protein B-like 
 cit-r.1   102619266   HMG-Y-related protein B-like 
 gma-u.5   100804682   HMG-Y-related protein A 
 gma-u.5   100793697   HMG-Y-related protein A 
 gma-u.5   100802642   HMG-Y-related protein B 
 vvi-u.5   100244042   HMG-Y-related protein A 
 ppo-u.5   7459767   HMG-Y-related protein B 
 ppo-u.5   7482897   HMG-Y-related protein B 
 ppo-u.5   7487391   HMG-Y-related protein A 
 mtr-u.5   11410322   HMG-Y-related protein B 
 mtr-u.5   11426698   HMG-Y-related protein A 
 sly-u.5   101260139   HMG-Y-related protein B 
 sly-u.5   101268754   HMG-Y-related protein A 
 sly-u.5   101257130   HMG-Y-related protein A 
 sot-r.1   102597480   HMG-Y-related protein B-like 
 sot-r.1   102582893   HMG-Y-related protein A-like 
 sot-r.1   102584819   HMG-Y-related protein A-like 
 nta-r.1   107765117   HMG-Y-related protein A 
 nta-r.1   107810431   HMG-Y-related protein A-like 
 nta-r.1   107778578   HMG-Y-related protein A-like 
 osa-u.5   4347003   HMG-Y-related protein A 
 osa-u.5   4345627   HMG-Y-related protein A 
 zma-u.5   541871   high mobility group I/Y-2 
 zma-u.5   100277576   uncharacterized LOC100277576 
 tae-r.2   123113340   HMG-Y-related protein A 
 tae-r.2   123122853   HMG-Y-related protein A 
 tae-r.2   123105044   HMG-Y-related protein A 
 hvu-r.1   123452257   HMG-Y-related protein A-like 
 sbi-r.1   8075642   HMG-Y-related protein A 
 bdi-r.1   100822567   HMG-Y-related protein A 
 bdi-r.1   100846746   HMG-Y-related protein A 

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Top 50 coexpressed genes to HMGA (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HMGA (ath-m.9 coexpression data)

CoexMap"838055"


athHMGA | Entrez gene ID : 838055      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 2 3 1 3 2 3 3 3 2 2 3 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0000785 [list] [network] chromatin  (140 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA ISS  
GO:0005829 [list] [network] cytosol  (2593 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
Protein NP_172943.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_172943.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for NP_172943.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
HMGA
ath-u.5
for
HMGA
ath-r.7
for
HMGA
ath-e.2
for
HMGA
ath-m.4.bio
for
HMGA
ath-m.4.hor
for
HMGA
ath-m.4.lig
for
HMGA
ath-m.4.str
for
HMGA
ath-m.4.tis
for
HMGA
bra-r.6
for
103827568
bra-r.6
for
103854054
bna-r.1
for
106447960
bna-r.1
for
106406902
bna-r.1
for
106389164
ghi-r.1
for
107946285
ghi-r.1
for
107936810
ghi-r.1
for
107946286
cit-r.1
for
102619719
cit-r.1
for
102619266
gma-u.5
for
100804682
gma-u.5
for
100793697
gma-u.5
for
100802642
vvi-u.5
for
100244042
ppo-u.5
for
7459767
ppo-u.5
for
7482897
ppo-u.5
for
7487391
mtr-u.5
for
11410322
mtr-u.5
for
11426698
sly-u.5
for
101260139
sly-u.5
for
101268754
sly-u.5
for
101257130
sot-r.1
for
102597480
sot-r.1
for
102582893
sot-r.1
for
102584819
nta-r.1
for
107765117
nta-r.1
for
107810431
nta-r.1
for
107778578
osa-u.5
for
4347003
osa-u.5
for
4345627
zma-u.5
for
541871
zma-u.5
for
100277576
tae-r.2
for
123113340
tae-r.2
for
123122853
tae-r.2
for
123105044
hvu-r.1
for
123452257
sbi-r.1
for
8075642
bdi-r.1
for
100822567
bdi-r.1
for
100846746


Ortholog ID: 2855
Species ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma tae tae tae hvu sbi bdi bdi
Symbol HMGA LOC103827568 LOC103854054 LOC106447960 LOC106389164 LOC106404543 LOC107934494 LOC107901969 LOC121219363 LOC102619719 LOC102619266 LOC100804682 LOC100802642 LOC100305747 LOC100244042 LOC7482897 LOC7487391 LOC18106641 LOC11410322 LOC11426698 LOC101260139 LOC101268754 LOC101257130 LOC102597480 LOC102582893 LOC102584819 LOC107778578 LOC107781199 LOC107783486 LOC4347003 LOC4345627 LOC541871 LOC100277576 LOC123113340 LOC123122853 LOC123105044 LOC123452257 LOC8075642 LOC100822567 LOC100846746
Function* high mobility group A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A-like HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein B-like HMG-Y-related protein B-like HMG-Y-related protein A HMG-Y-related protein B H15 superfamily protein HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein B-like HMG-Y-related protein A-like HMG-Y-related protein A-like HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein A high mobility group I/Y-2 uncharacterized LOC100277576 HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 4
ath04517 IgSF CAM signaling 4
ath04814 Motor proteins 4
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00220 Arginine biosynthesis 4
bra00250 Alanine, aspartate and glutamate metabolism 4
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 3
ghi03410 Base excision repair 3
ghi03420 Nucleotide excision repair 3
ghi03430 Mismatch repair 3
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 4
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 4
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 3
nta01232 Nucleotide metabolism 3
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
osa04141 Protein processing in endoplasmic reticulum 2
osa04145 Phagosome 2
osa03010 Ribosome 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838055 103827568 103854054 106447960 106389164 106404543 107934494 107901969 121219363 102619719 102619266 100804682 100802642 100305747 100244042 7482897 7487391 18106641 11410322 11426698 101260139 101268754 101257130 102597480 102582893 102584819 107778578 107781199 107783486 4347003 4345627 541871 100277576 123113340 123122853 123105044 123452257 8075642 100822567 100846746
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