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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PTAC6   plastid transcriptionally active 6 
 ath-u.5   PTAC6   plastid transcriptionally active 6 
 ath-r.7   PTAC6   plastid transcriptionally active 6 
 ath-e.2   PTAC6   plastid transcriptionally active 6 
 ath-m.4.bio   PTAC6   plastid transcriptionally active 6 
 ath-m.4.hor   PTAC6   plastid transcriptionally active 6 
 ath-m.4.lig   PTAC6   plastid transcriptionally active 6 
 ath-m.4.str   PTAC6   plastid transcriptionally active 6 
 ath-m.4.tis   PTAC6   plastid transcriptionally active 6 
 bra-r.6   103873001   uncharacterized LOC103873001 
 bra-r.6   103835739   uncharacterized LOC103835739 
 bna-r.1   106347369   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 bna-r.1   BNAC05G16910D   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 bna-r.1   106425901   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 ghi-r.1   107910367   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 ghi-r.1   107951492   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 cit-r.1   102626178   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 gma-u.5   100792016   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 gma-u.5   100782614   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 vvi-u.5   100250482   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 ppo-u.5   7467864   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 mtr-u.5   25489706   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 sly-u.5   101249346   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 sot-r.1   102599847   uncharacterized LOC102599847 
 nta-r.1   107760033   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic-like 
 nta-r.1   107789386   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 osa-u.5   4349577   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 osa-u.5   4351293   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 zma-u.5   100273953   plastid transcriptionally active 6 
 tae-r.2   123120357   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 tae-r.2   123111374   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 tae-r.2   123103184   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 hvu-r.1   123397807   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 sbi-r.1   8067595   uncharacterized LOC8067595 
 bdi-r.1   100832200   uncharacterized LOC100832200 

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Top 50 coexpressed genes to PTAC6 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PTAC6 (ath-m.9 coexpression data)

CoexMap"838761"


athPTAC6 | Entrez gene ID : 838761      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 2 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042793 [list] [network] plastid transcription  (15 genes)  IMP  
GO:0010017 [list] [network] red or far-red light signaling pathway  (53 genes)  IMP  
GO:0009735 [list] [network] response to cytokinin  (124 genes)  IEP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IDA IMP  
GO CC
GO:0000427 [list] [network] plastid-encoded plastid RNA polymerase complex  (12 genes)  IDA  
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  HDA  
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IC IDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0003723 [list] [network] RNA binding  (1764 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031076.1 [sequence] [blastp]
NP_564144.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001031076.1)
chlo 9  (predict for NP_564144.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001031076.1)
chlo 8  (predict for NP_564144.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PTAC6
ath-u.5
for
PTAC6
ath-r.7
for
PTAC6
ath-e.2
for
PTAC6
ath-m.4.bio
for
PTAC6
ath-m.4.hor
for
PTAC6
ath-m.4.lig
for
PTAC6
ath-m.4.str
for
PTAC6
ath-m.4.tis
for
PTAC6
bra-r.6
for
103873001
bra-r.6
for
103835739
bna-r.1
for
106347369
bna-r.1
for
BNAC05G16910D
bna-r.1
for
106425901
ghi-r.1
for
107910367
ghi-r.1
for
107951492
cit-r.1
for
102626178
gma-u.5
for
100792016
gma-u.5
for
100782614
vvi-u.5
for
100250482
ppo-u.5
for
7467864
mtr-u.5
for
25489706
sly-u.5
for
101249346
sot-r.1
for
102599847
nta-r.1
for
107760033
nta-r.1
for
107789386
osa-u.5
for
4349577
osa-u.5
for
4351293
zma-u.5
for
100273953
tae-r.2
for
123120357
tae-r.2
for
123111374
tae-r.2
for
123103184
hvu-r.1
for
123397807
sbi-r.1
for
8067595
bdi-r.1
for
100832200


Ortholog ID: 9222
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa osa zma tae tae tae hvu sbi bdi
Symbol PTAC6 LOC103873001 LOC103835739 LOC106347369 BNAC05G16910D LOC106425901 LOC107910367 LOC107951492 LOC102626178 LOC100792016 LOC100782614 LOC100250482 LOC7467864 LOC25489706 LOC101249346 LOC102599847 LOC107760033 LOC107789386 LOC4349577 LOC4351293 LOC100273953 LOC123120357 LOC123111374 LOC123103184 LOC123397807 LOC8067595 LOC100832200
Function* plastid transcriptionally active 6 uncharacterized LOC103873001 uncharacterized LOC103835739 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic uncharacterized LOC102599847 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic-like PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic plastid transcriptionally active 6 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic uncharacterized LOC8067595 uncharacterized LOC100832200
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma03060 Protein export 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838761 103873001 103835739 106347369 106401601 106425901 107910367 107951492 102626178 100792016 100782614 100250482 7467864 25489706 101249346 102599847 107760033 107789386 4349577 4351293 100273953 123120357 123111374 123103184 123397807 8067595 100832200
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