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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PTAC6   plastid transcriptionally active 6 
 ath-r.7   PTAC6   plastid transcriptionally active 6 
 ath-m.9   PTAC6   plastid transcriptionally active 6 
 ath-e.2   PTAC6   plastid transcriptionally active 6 
 ath-m.4.bio   PTAC6   plastid transcriptionally active 6 
 ath-m.4.hor   PTAC6   plastid transcriptionally active 6 
 ath-m.4.lig   PTAC6   plastid transcriptionally active 6 
 ath-m.4.str   PTAC6   plastid transcriptionally active 6 
 ath-m.4.tis   PTAC6   plastid transcriptionally active 6 
 gma-u.5   100792016   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 gma-u.5   100782614   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 vvi-u.5   100250482   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 ppo-u.5   7467864   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 mtr-u.5   25489706   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 sly-u.5   101249346   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 osa-u.5   4349577   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 osa-u.5   4351293   PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic 
 zma-u.5   100273953   plastid transcriptionally active 6 

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Top 50 coexpressed genes to PTAC6 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PTAC6 (ath-u.5 coexpression data)

CoexMap"838761"


athPTAC6 | Entrez gene ID : 838761      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042793 [list] [network] plastid transcription  (15 genes)  IMP  
GO:0010017 [list] [network] red or far-red light signaling pathway  (53 genes)  IMP  
GO:0009735 [list] [network] response to cytokinin  (124 genes)  IEP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IDA IMP  
GO CC
GO:0000427 [list] [network] plastid-encoded plastid RNA polymerase complex  (12 genes)  IDA  
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  HDA  
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IC IDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0003723 [list] [network] RNA binding  (1764 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031076.1 [sequence] [blastp]
NP_564144.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001031076.1)
chlo 9  (predict for NP_564144.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001031076.1)
chlo 8  (predict for NP_564144.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PTAC6

.
ath-r.7
for
PTAC6

.
ath-m.9
for
PTAC6

.
ath-e.2
for
PTAC6

.
ath-m.4.bio
for
PTAC6

.
ath-m.4.hor
for
PTAC6

.
ath-m.4.lig
for
PTAC6

.
ath-m.4.str
for
PTAC6

.
ath-m.4.tis
for
PTAC6

.
gma-u.5
for
100792016

.
gma-u.5
for
100782614

.
vvi-u.5
for
100250482

.
ppo-u.5
for
7467864

.
mtr-u.5
for
25489706

.
sly-u.5
for
101249346

.
osa-u.5
for
4349577

.
osa-u.5
for
4351293

.
zma-u.5
for
100273953

.


Ortholog ID: 9222
Species ath gma gma sly osa osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol PTAC6 LOC100782614 LOC100792016 LOC101249346 LOC4351293 LOC4349577 LOC100273953 LOC103835739 LOC103873001 LOC100250482 LOC7467864 LOC25489706 LOC123111374 LOC123103184 LOC123397807 LOC107951492 LOC107910367 LOC106425901 BNAC05G16910D LOC8067595 LOC102599847 LOC102626178 LOC100832200 LOC107789386 LOC107760033
Function* plastid transcriptionally active 6 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic plastid transcriptionally active 6 uncharacterized LOC103835739 uncharacterized LOC103873001 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic uncharacterized LOC8067595 uncharacterized LOC102599847 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic uncharacterized LOC100832200 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma03060 Protein export 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838761 100782614 100792016 101249346 4351293 4349577 100273953 103835739 103873001 100250482 7467864 25489706 123111374 123103184 123397807 107951492 107910367 106425901 106401601 8067595 102599847 102626178 100832200 107789386 107760033
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