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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   GI   gigantea protein (GI) 
 ath-u.5   GI   gigantea protein (GI) 
 ath-r.7   GI   gigantea protein (GI) 
 ath-e.2   GI   gigantea protein (GI) 
 ath-m.4.bio   GI   gigantea protein (GI) 
 ath-m.4.hor   GI   gigantea protein (GI) 
 ath-m.4.lig   GI   gigantea protein (GI) 
 ath-m.4.str   GI   gigantea protein (GI) 
 ath-m.4.tis   GI   gigantea protein (GI) 
 bra-r.6   103249166   protein GIGANTEA 
 bna-r.1   106400371   protein GIGANTEA 
 bna-r.1   106429770   protein GIGANTEA 
 ghi-r.1   107910471   protein GIGANTEA 
 ghi-r.1   121217871   protein GIGANTEA 
 ghi-r.1   107951610   protein GIGANTEA 
 cit-r.1   102626780   protein GIGANTEA 
 gma-u.5   GIGANTEA   protein GIGANTEA 
 gma-u.5   E2   protein GIGANTEA 
 gma-u.5   100781641   protein GIGANTEA 
 vvi-u.5   100254197   protein GIGANTEA 
 ppo-u.5   7492485   protein GIGANTEA 
 ppo-u.5   7467800   protein GIGANTEA 
 sly-u.5   101258346   protein GIGANTEA-like 
 sly-u.5   101255788   protein GIGANTEA 
 sot-r.1   102578719   protein GIGANTEA-like 
 sot-r.1   102583457   protein GIGANTEA-like 
 nta-r.1   107784760   protein GIGANTEA 
 nta-r.1   107765780   protein GIGANTEA-like 
 nta-r.1   107762016   protein GIGANTEA-like 
 osa-u.5   4325329   protein GIGANTEA-like 
 zma-u.5   100147733   uncharacterized LOC100147733 
 zma-u.5   100272803   uncharacterized LOC100272803 
 tae-r.2   123077506   protein GIGANTEA 
 tae-r.2   123068975   protein GIGANTEA 
 tae-r.2   542970   protein GIGANTEA 
 hvu-r.1   123442959   protein GIGANTEA 
 sbi-r.1   110433900   protein GIGANTEA 
 bdi-r.1   100822621   protein GIGANTEA 

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Top 50 coexpressed genes to GI (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GI (ath-m.9 coexpression data)

CoexMap"838883"


athGI | Entrez gene ID : 838883      
Species ath bra bna ghi cit gma vvi ppo sly sot nta osa zma tae hvu sbi bdi cre mtr
Paralog 9 1 2 3 1 3 1 2 2 2 3 1 2 3 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0010378 [list] [network] temperature compensation of the circadian clock  (4 genes)  IMP  
GO:0048578 [list] [network] positive regulation of long-day photoperiodism, flowering  (11 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IMP  
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  IMP  
GO:0042542 [list] [network] response to hydrogen peroxide  (63 genes)  IMP  
GO:0009637 [list] [network] response to blue light  (94 genes)  IDA  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IDA  
GO:0009908 [list] [network] flower development  (378 genes)  TAS  
GO:0009409 [list] [network] response to cold  (436 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IDA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_564180.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  nucl 2,  vacu 1,  extr 1,  E.R. 1  (predict for NP_564180.1)
Subcellular
localization
TargetP
other 6  (predict for NP_564180.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
GI
ath-u.5
for
GI
ath-r.7
for
GI
ath-e.2
for
GI
ath-m.4.bio
for
GI
ath-m.4.hor
for
GI
ath-m.4.lig
for
GI
ath-m.4.str
for
GI
ath-m.4.tis
for
GI
bra-r.6
for
103249166
bna-r.1
for
106400371
bna-r.1
for
106429770
ghi-r.1
for
107910471
ghi-r.1
for
121217871
ghi-r.1
for
107951610
cit-r.1
for
102626780
gma-u.5
for
GIGANTEA
gma-u.5
for
E2
gma-u.5
for
100781641
vvi-u.5
for
100254197
ppo-u.5
for
7492485
ppo-u.5
for
7467800
sly-u.5
for
101258346
sly-u.5
for
101255788
sot-r.1
for
102578719
sot-r.1
for
102583457
nta-r.1
for
107784760
nta-r.1
for
107765780
nta-r.1
for
107762016
osa-u.5
for
4325329
zma-u.5
for
100147733
zma-u.5
for
100272803
tae-r.2
for
123077506
tae-r.2
for
123068975
tae-r.2
for
542970
hvu-r.1
for
123442959
sbi-r.1
for
110433900
bdi-r.1
for
100822621


Ortholog ID: 7043
Species ath bra bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol GI LOC103249166 LOC106400371 LOC106429770 LOC107910471 LOC121217871 LOC107914084 LOC102626780 GIGANTEA E2 LOC100781641 LOC100254197 LOC7492485 LOC7467800 LOC101258346 LOC101255788 LOC102578719 LOC102583457 LOC107784760 LOC107765780 LOC107762016 LOC4325329 LOC100147733 LOC100272803 LOC123077506 LOC123068975 LOC542970 LOC123442959 LOC110433900 LOC100822621
Function* gigantea protein (GI) protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA-like protein GIGANTEA protein GIGANTEA-like protein GIGANTEA-like protein GIGANTEA protein GIGANTEA-like protein GIGANTEA-like protein GIGANTEA-like uncharacterized LOC100147733 uncharacterized LOC100272803 protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 7
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 7
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi00052 Galactose metabolism 2
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 5
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 8
sot00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 8
sot00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 9
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
osa01240 Biosynthesis of cofactors 3
osa00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 3
hvu00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
sbi00730 Thiamine metabolism 3
sbi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838883 103249166 106400371 106429770 107910471 121217871 107914084 102626780 100779044 100800578 100781641 100254197 7492485 7467800 101258346 101255788 102578719 102583457 107784760 107765780 107762016 4325329 100147733 100272803 123077506 123068975 542970 123442959 110433900 100822621
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