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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   542970   protein GIGANTEA 
 tae-r.2   123077506   protein GIGANTEA 
 tae-r.2   123068975   protein GIGANTEA 
 hvu-r.1   123442959   protein GIGANTEA 
 bdi-r.1   100822621   protein GIGANTEA 
 osa-u.5   4325329   protein GIGANTEA-like 
 zma-u.5   100147733   uncharacterized LOC100147733 
 zma-u.5   100272803   uncharacterized LOC100272803 
 sbi-r.1   110433900   protein GIGANTEA 
 ath-u.5   GI   gigantea protein (GI) 
 gma-u.5   E2   protein GIGANTEA 
 gma-u.5   100781641   protein GIGANTEA 
 gma-u.5   GIGANTEA   protein GIGANTEA 
 sly-u.5   101258346   protein GIGANTEA-like 
 sly-u.5   101255788   protein GIGANTEA 
 bra-r.6   103249166   protein GIGANTEA 
 vvi-u.5   100254197   protein GIGANTEA 
 ppo-u.5   7467800   protein GIGANTEA 
 ppo-u.5   7492485   protein GIGANTEA 
 ghi-r.1   107910471   protein GIGANTEA 
 ghi-r.1   121217871   protein GIGANTEA 
 ghi-r.1   107951610   protein GIGANTEA 
 bna-r.1   106400371   protein GIGANTEA 
 bna-r.1   106429770   protein GIGANTEA 
 sot-r.1   102578719   protein GIGANTEA-like 
 sot-r.1   102583457   protein GIGANTEA-like 
 cit-r.1   102626780   protein GIGANTEA 
 nta-r.1   107784760   protein GIGANTEA 
 nta-r.1   107765780   protein GIGANTEA-like 
 nta-r.1   107762016   protein GIGANTEA-like 

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Top 50 coexpressed genes to 542970 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542970 (tae-r.2 coexpression data)

CoexMap"542970"


taeLOC542970 | Entrez gene ID : 542970    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo ghi bna sot cit nta cre mtr
Paralog 3 1 1 1 2 1 1 3 2 1 1 2 3 2 2 1 3 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes04712 [list] [network] Circadian rhythm - plant (179 genes)
GO BP
GO:0048586 [list] [network] regulation of long-day photoperiodism, flowering  (9 genes)  IEA  
GO:0042752 [list] [network] regulation of circadian rhythm  (37 genes)  IEA  
GO:0006950 [list] [network] response to stress  (4347 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO MF
Protein XP_044339096.1 [sequence] [blastp]
XP_044339097.1 [sequence] [blastp]
XP_044339098.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_044339096.1)
nucl 7,  cyto 1,  chlo 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_044339097.1)
nucl 7,  cyto 1,  chlo 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_044339098.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_044339096.1)
other 7,  mito 3  (predict for XP_044339097.1)
other 7,  mito 3  (predict for XP_044339098.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
542970
tae-r.2
for
123077506
tae-r.2
for
123068975
hvu-r.1
for
123442959
bdi-r.1
for
100822621
osa-u.5
for
4325329
zma-u.5
for
100147733
zma-u.5
for
100272803
sbi-r.1
for
110433900
ath-u.5
for
GI
gma-u.5
for
E2
gma-u.5
for
100781641
gma-u.5
for
GIGANTEA
sly-u.5
for
101258346
sly-u.5
for
101255788
bra-r.6
for
103249166
vvi-u.5
for
100254197
ppo-u.5
for
7467800
ppo-u.5
for
7492485
ghi-r.1
for
107910471
ghi-r.1
for
121217871
ghi-r.1
for
107951610
bna-r.1
for
106400371
bna-r.1
for
106429770
sot-r.1
for
102578719
sot-r.1
for
102583457
cit-r.1
for
102626780
nta-r.1
for
107784760
nta-r.1
for
107765780
nta-r.1
for
107762016


Ortholog ID: 7043
Species tae tae tae hvu bdi osa zma zma sbi ath gma gma gma sly sly bra vvi ppo ppo ghi ghi ghi bna bna sot sot cit nta nta nta
Symbol LOC542970 LOC123077506 LOC123068975 LOC123442959 LOC100822621 LOC4325329 LOC100147733 LOC100272803 LOC110433900 GI E2 LOC100781641 GIGANTEA LOC101258346 LOC101255788 LOC103249166 LOC100254197 LOC7467800 LOC7492485 LOC107910471 LOC121217871 LOC107914084 LOC106400371 LOC106429770 LOC102578719 LOC102583457 LOC102626780 LOC107784760 LOC107765780 LOC107762016
Function* protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA-like uncharacterized LOC100147733 uncharacterized LOC100272803 protein GIGANTEA gigantea protein (GI) protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA-like protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA protein GIGANTEA-like protein GIGANTEA-like protein GIGANTEA protein GIGANTEA protein GIGANTEA-like protein GIGANTEA-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 3
hvu00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
osa01240 Biosynthesis of cofactors 3
osa00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
sbi00730 Thiamine metabolism 3
sbi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi00052 Galactose metabolism 2
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 7
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 7
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 8
sot00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 8
sot00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 5
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 9
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542970 123077506 123068975 123442959 100822621 4325329 100147733 100272803 110433900 838883 100800578 100781641 100779044 101258346 101255788 103249166 100254197 7467800 7492485 107910471 121217871 107914084 106400371 106429770 102578719 102583457 102626780 107784760 107765780 107762016
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