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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   TEM1   AP2/B3 transcription factor family protein 
 ath-u.5   TEM1   AP2/B3 transcription factor family protein 
 ath-r.7   TEM1   AP2/B3 transcription factor family protein 
 ath-e.2   TEM1   AP2/B3 transcription factor family protein 
 ath-m.4.bio   TEM1   AP2/B3 transcription factor family protein 
 ath-m.4.hor   TEM1   AP2/B3 transcription factor family protein 
 ath-m.4.lig   TEM1   AP2/B3 transcription factor family protein 
 ath-m.4.str   TEM1   AP2/B3 transcription factor family protein 
 ath-m.4.tis   TEM1   AP2/B3 transcription factor family protein 
 ath-u.5   EDF3   ethylene response DNA binding factor 3 
 ath-u.5   RAV1   uncharacterized protein 
 ath-u.5   RAV2   uncharacterized protein 
 bra-r.6   103835464   AP2/ERF and B3 domain-containing transcription repressor TEM1 
 bra-r.6   103840594   AP2/ERF and B3 domain-containing transcription repressor TEM1 
 bra-r.6   103843064   AP2/ERF and B3 domain-containing transcription factor RAV1 
 bna-r.1   106347144   AP2/ERF and B3 domain-containing transcription repressor TEM1-like 
 bna-r.1   106346436   AP2/ERF and B3 domain-containing transcription factor RAV1 
 bna-r.1   106349404   AP2/ERF and B3 domain-containing transcription factor ARF14-like 
 ghi-r.1   121219047   AP2/ERF and B3 domain-containing transcription factor RAV1 
 ghi-r.1   121211011   AP2/ERF and B3 domain-containing transcription factor RAV1 
 ghi-r.1   107946446   AP2/ERF and B3 domain-containing transcription factor RAV1 
 cit-r.1   102623456   AP2/ERF and B3 domain-containing transcription repressor RAV2 
 cit-r.1   102623184   AP2/ERF and B3 domain-containing transcription repressor RAV2-like 
 gma-u.5   RAV   RAV-like DNA-binding protein 
 gma-u.5   100789009   AP2/ERF and B3 domain-containing transcription repressor RAV2 
 gma-u.5   100801107   AP2/ERF and B3 domain-containing transcription repressor TEM1 
 vvi-u.5   100262843   AP2/ERF and B3 domain-containing transcription factor RAV1 
 ppo-u.5   7483931   AP2/ERF and B3 domain-containing transcription repressor RAV2 
 ppo-u.5   7466917   AP2/ERF and B3 domain-containing transcription repressor TEM1 
 mtr-u.5   11422381   AP2/ERF and B3 domain-containing transcription factor RAV1 
 mtr-u.5   11436458   AP2/ERF and B3 domain-containing transcription factor RAV1 
 sly-u.5   101259430   AP2/ERF and B3 domain-containing transcription factor RAV1 
 sly-u.5   RAV2   transcription factor RELATED TO ABI3/VP1 2 
 sot-r.1   102588131   AP2/ERF and B3 domain-containing transcription factor RAV1 
 sot-r.1   102584696   AP2/ERF and B3 domain-containing transcription factor RAV1 
 nta-r.1   107829180   AP2/ERF and B3 domain-containing transcription factor RAV1 
 nta-r.1   107788490   AP2/ERF and B3 domain-containing transcription repressor RAV2-like 
 osa-u.5   4339522   AP2/ERF and B3 domain-containing protein Os05g0549800-like 
 osa-u.5   107277455   putative AP2/ERF and B3 domain-containing protein Os01g0140700 
 osa-u.5   4325650   AP2/ERF and B3 domain-containing protein Os01g0693400-like 
 zma-u.5   103626167   AP2/ERF and B3 domain-containing protein Os01g0693400 
 zma-u.5   103635292   AP2/ERF and B3 domain-containing protein Os05g0549800 
 zma-u.5   100273875   uncharacterized LOC100273875 
 tae-r.2   123066132   AP2/ERF and B3 domain-containing protein Os05g0549800 
 tae-r.2   123061813   AP2/ERF and B3 domain-containing protein Os01g0693400 
 hvu-r.1   123449102   AP2/ERF and B3 domain-containing protein Os05g0549800-like 
 hvu-r.1   123444167   AP2/ERF and B3 domain-containing protein Os01g0693400-like 
 sbi-r.1   8061113   AP2/ERF and B3 domain-containing protein Os05g0549800 
 sbi-r.1   8063099   AP2/ERF and B3 domain-containing protein Os01g0693400 
 bdi-r.1   100824064   AP2/ERF and B3 domain-containing protein Os05g0549800 
 bdi-r.1   100824693   AP2/ERF and B3 domain-containing protein Os01g0693400 
 bdi-r.1   100838675   putative AP2/ERF and B3 domain-containing protein Os01g0140700 

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Top 50 coexpressed genes to TEM1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TEM1 (ath-m.9 coexpression data)

CoexMap"839143"


athTEM1 | Entrez gene ID : 839143      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 2 3 1 2 2 2 2 2 3 3 2 2 2 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009873 [list] [network] ethylene-activated signaling pathway  (61 genes)  NAS  
GO:0048573 [list] [network] photoperiodism, flowering  (77 genes)  IMP  
GO:0071456 [list] [network] cellular response to hypoxia  (241 genes)  HEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1274 genes)  NAS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_173927.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_173927.1)
Subcellular
localization
TargetP
chlo 7,  other 6  (predict for NP_173927.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
TEM1
ath-u.5
for
TEM1
ath-r.7
for
TEM1
ath-e.2
for
TEM1
ath-m.4.bio
for
TEM1
ath-m.4.hor
for
TEM1
ath-m.4.lig
for
TEM1
ath-m.4.str
for
TEM1
ath-m.4.tis
for
TEM1
ath-u.5
for
EDF3
ath-u.5
for
RAV1
ath-u.5
for
RAV2
bra-r.6
for
103835464
bra-r.6
for
103840594
bra-r.6
for
103843064
bna-r.1
for
106347144
bna-r.1
for
106346436
bna-r.1
for
106349404
ghi-r.1
for
121219047
ghi-r.1
for
121211011
ghi-r.1
for
107946446
cit-r.1
for
102623456
cit-r.1
for
102623184
gma-u.5
for
RAV
gma-u.5
for
100789009
gma-u.5
for
100801107
vvi-u.5
for
100262843
ppo-u.5
for
7483931
ppo-u.5
for
7466917
mtr-u.5
for
11422381
mtr-u.5
for
11436458
sly-u.5
for
101259430
sly-u.5
for
RAV2
sot-r.1
for
102588131
sot-r.1
for
102584696
nta-r.1
for
107829180
nta-r.1
for
107788490
osa-u.5
for
4339522
osa-u.5
for
107277455
osa-u.5
for
4325650
zma-u.5
for
103626167
zma-u.5
for
103635292
zma-u.5
for
100273875
tae-r.2
for
123066132
tae-r.2
for
123061813
hvu-r.1
for
123449102
hvu-r.1
for
123444167
sbi-r.1
for
8061113
sbi-r.1
for
8063099
bdi-r.1
for
100824064
bdi-r.1
for
100824693
bdi-r.1
for
100838675


Ortholog ID: 1274
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa osa zma zma zma tae hvu hvu sbi sbi bdi bdi bdi
Symbol TEM1 EDF3 RAV2 LOC103835464 LOC103853887 LOC103875354 LOC106361860 LOC106361922 LOC106424347 LOC121211011 LOC107894163 LOC107887166 LOC102623456 LOC102623184 LOC100789009 LOC100801107 RAV1 LOC100262843 LOC7483931 LOC7466917 LOC11422381 LOC11436458 LOC101259430 RAV2 LOC102588131 LOC102584696 LOC107829180 LOC107788490 LOC107770616 LOC4339522 LOC107277455 LOC4325650 LOC103626167 LOC103635292 LOC100284738 LOC123078915 LOC123449102 LOC123418113 LOC8061113 LOC8063099 LOC100824064 LOC100824693 LOC100838675
Function* AP2/B3 transcription factor family protein ethylene response DNA binding factor 3 uncharacterized protein AP2/ERF and B3 domain-containing transcription repressor TEM1 AP2/ERF and B3 domain-containing transcription factor ARF14 AP2/ERF and B3 domain-containing transcription factor ARF14 AP2/ERF and B3 domain-containing transcription repressor TEM1-like AP2/ERF and B3 domain-containing transcription repressor TEM1-like AP2/ERF and B3 domain-containing transcription factor ARF14 AP2/ERF and B3 domain-containing transcription factor RAV1 AP2/ERF and B3 domain-containing transcription repressor RAV2 AP2/ERF and B3 domain-containing transcription factor RAV1 AP2/ERF and B3 domain-containing transcription repressor RAV2 AP2/ERF and B3 domain-containing transcription repressor RAV2-like AP2/ERF and B3 domain-containing transcription repressor RAV2 AP2/ERF and B3 domain-containing transcription repressor TEM1 AP2/ERF transcription factor family protein RAV1 AP2/ERF and B3 domain-containing transcription factor RAV1 AP2/ERF and B3 domain-containing transcription repressor RAV2 AP2/ERF and B3 domain-containing transcription repressor TEM1 AP2/ERF and B3 domain-containing transcription factor RAV1 AP2/ERF and B3 domain-containing transcription factor RAV1 AP2/ERF and B3 domain-containing transcription factor RAV1 transcription factor RELATED TO ABI3/VP1 2 AP2/ERF and B3 domain-containing transcription factor RAV1 AP2/ERF and B3 domain-containing transcription factor RAV1 AP2/ERF and B3 domain-containing transcription factor RAV1 AP2/ERF and B3 domain-containing transcription repressor RAV2-like AP2/ERF and B3 domain-containing transcription factor RAV1 AP2/ERF and B3 domain-containing protein Os05g0549800-like putative AP2/ERF and B3 domain-containing protein Os01g0140700 AP2/ERF and B3 domain-containing protein Os01g0693400-like AP2/ERF and B3 domain-containing protein Os01g0693400 AP2/ERF and B3 domain-containing protein Os05g0549800 DNA-binding protein RAV1 AP2/ERF and B3 domain-containing protein Os01g0693400 AP2/ERF and B3 domain-containing protein Os05g0549800-like AP2/ERF and B3 domain-containing protein Os05g0549800-like AP2/ERF and B3 domain-containing protein Os05g0549800 AP2/ERF and B3 domain-containing protein Os01g0693400 AP2/ERF and B3 domain-containing protein Os05g0549800 AP2/ERF and B3 domain-containing protein Os01g0693400 putative AP2/ERF and B3 domain-containing protein Os01g0140700
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 4
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 5
bra04016 MAPK signaling pathway - plant 3
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
ghi00543 Exopolysaccharide biosynthesis 4
ghi00920 Sulfur metabolism 4
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 7
cit04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 4
mtr04075 Plant hormone signal transduction 4
mtr00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 5
mtr04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 3
sly04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 8
sot04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00906 Carotenoid biosynthesis 2
nta04016 MAPK signaling pathway - plant 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 6
nta04075 Plant hormone signal transduction 4
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 10
nta04075 Plant hormone signal transduction 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 2
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 2
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 4
bdi04016 MAPK signaling pathway - plant 3
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04016 MAPK signaling pathway - plant 2
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839143 822164 843216 103835464 103853887 103875354 106361860 106361922 106424347 121211011 107894163 107887166 102623456 102623184 100789009 100801107 100776987 100262843 7483931 7466917 11422381 11436458 101259430 101264719 102588131 102584696 107829180 107788490 107770616 4339522 107277455 4325650 103626167 103635292 100284738 123078915 123449102 123418113 8061113 8063099 100824064 100824693 100838675
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