ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123061813	AP2/ERF and B3 domain-containing protein Os01g0693400
osa-u.5	4339522	AP2/ERF and B3 domain-containing protein Os05g0549800-like
osa-u.5	4325650	AP2/ERF and B3 domain-containing protein Os01g0693400-like
osa-u.5	107277455	putative AP2/ERF and B3 domain-containing protein Os01g0140700
zma-u.5	103626167	AP2/ERF and B3 domain-containing protein Os01g0693400
zma-u.5	103635292	AP2/ERF and B3 domain-containing protein Os05g0549800
zma-u.5	100284738	DNA-binding protein RAV1
ath-u.5	EDF3	ethylene response DNA binding factor 3
ath-u.5	RAV1	uncharacterized protein
ath-u.5	TEM1	AP2/B3 transcription factor family protein
gma-u.5	RAV	RAV-like DNA-binding protein
gma-u.5	100789009	AP2/ERF and B3 domain-containing transcription repressor RAV2
gma-u.5	100801107	AP2/ERF and B3 domain-containing transcription repressor TEM1
sly-u.5	RAV2	transcription factor RELATED TO ABI3/VP1 2
sly-u.5	101259430	AP2/ERF and B3 domain-containing transcription factor RAV1
vvi-u.5	100262843	AP2/ERF and B3 domain-containing transcription factor RAV1
ppo-u.5	7466917	AP2/ERF and B3 domain-containing transcription repressor TEM1
ppo-u.5	7483931	AP2/ERF and B3 domain-containing transcription repressor RAV2
mtr-u.5	11422381	AP2/ERF and B3 domain-containing transcription factor RAV1
mtr-u.5	11436458	AP2/ERF and B3 domain-containing transcription factor RAV1

Top 50 coexpressed genes to 123061813 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123061813 (tae-r.2 coexpression data)

CoexMap"123061813"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(5253 genes)

IEA

GO CC

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(3484 genes)	IEA
GO:0003677 [list] [network] DNA binding	(6662 genes)	IEA

Protein

XP_044341023.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, plas 2, chlo 1, cyto 1

(predict for XP_044341023.1)

Subcellular
localization
TargetP

other 8

(predict for XP_044341023.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123061813	osa-u.5 for 4339522	osa-u.5 for 4325650	osa-u.5 for 107277455	zma-u.5 for 103626167	zma-u.5 for 103635292	zma-u.5 for 100284738	ath-u.5 for EDF3	ath-u.5 for RAV1	ath-u.5 for TEM1	gma-u.5 for RAV	gma-u.5 for 100789009	gma-u.5 for 100801107	sly-u.5 for RAV2	sly-u.5 for 101259430	vvi-u.5 for 100262843	ppo-u.5 for 7466917	ppo-u.5 for 7483931	mtr-u.5 for 11422381	mtr-u.5 for 11436458

Ortholog

Ortholog ID: 1274

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

EDF3

RAV2

LOC100789009

RAV1

RAV2

Function^*

AP2/ERF and B3 domain-containing protein Os01g0693400

AP2/ERF and B3 domain-containing protein Os05g0549800-like

AP2/ERF and B3 domain-containing protein Os05g0549800

putative AP2/ERF and B3 domain-containing protein Os01g0140700

AP2/ERF and B3 domain-containing protein Os01g0693400-like

AP2/ERF and B3 domain-containing protein Os05g0549800-like

DNA-binding protein RAV1

AP2/ERF and B3 domain-containing protein Os05g0549800

AP2/ERF and B3 domain-containing protein Os01g0693400

AP2/ERF and B3 domain-containing protein Os05g0549800

ethylene response DNA binding factor 3

uncharacterized protein

AP2/ERF and B3 domain-containing transcription repressor RAV2

AP2/ERF transcription factor family protein RAV1

transcription factor RELATED TO ABI3/VP1 2