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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SMP1   Pre-mRNA splicing Prp18-interacting factor 
 ath-u.5   SMP1   Pre-mRNA splicing Prp18-interacting factor 
 ath-r.7   SMP1   Pre-mRNA splicing Prp18-interacting factor 
 ath-e.2   SMP1   Pre-mRNA splicing Prp18-interacting factor 
 ath-m.4.bio   SMP1   Pre-mRNA splicing Prp18-interacting factor 
 ath-m.4.hor   SMP1   Pre-mRNA splicing Prp18-interacting factor 
 ath-m.4.lig   SMP1   Pre-mRNA splicing Prp18-interacting factor 
 ath-m.4.str   SMP1   Pre-mRNA splicing Prp18-interacting factor 
 ath-m.4.tis   SMP1   Pre-mRNA splicing Prp18-interacting factor 
 ath-u.5   SMP2   Pre-mRNA splicing Prp18-interacting factor 
 bra-r.6   103833762   pre-mRNA-splicing factor SLU7 
 bra-r.6   103836599   pre-mRNA-splicing factor SLU7-A 
 bra-r.6   103844304   pre-mRNA-splicing factor SLU7-A 
 bna-r.1   111208800   pre-mRNA-splicing factor SLU7-A 
 bna-r.1   106370952   pre-mRNA-splicing factor SLU7-A 
 bna-r.1   106453449   pre-mRNA-splicing factor SLU7-like 
 ghi-r.1   107914928   pre-mRNA-splicing factor SLU7 
 ghi-r.1   121214909   pre-mRNA-splicing factor SLU7 
 ghi-r.1   107936255   pre-mRNA-splicing factor SLU7 
 cit-r.1   102616591   pre-mRNA-splicing factor SLU7-A 
 gma-u.5   100797503   pre-mRNA-splicing factor SLU7-A 
 gma-u.5   100778457   pre-mRNA-splicing factor SLU7-A 
 vvi-u.5   100249416   pre-mRNA-splicing factor SLU7 
 ppo-u.5   7484720   pre-mRNA-splicing factor SLU7-A 
 ppo-u.5   7453862   pre-mRNA-splicing factor SLU7-A 
 mtr-u.5   25499261   pre-mRNA-splicing factor SLU7-A 
 sly-u.5   101260949   pre-mRNA-splicing factor SLU7 
 sly-u.5   101252328   pre-mRNA-splicing factor SLU7 
 sot-r.1   102599170   pre-mRNA-splicing factor SLU7-like 
 sot-r.1   102586065   pre-mRNA-splicing factor SLU7-like 
 nta-r.1   107824087   pre-mRNA-splicing factor SLU7-like 
 nta-r.1   107767977   pre-mRNA-splicing factor SLU7 
 osa-u.5   4344572   pre-mRNA-splicing factor SLU7-like 
 zma-u.5   103629005   pre-mRNA-splicing factor SLU7 
 zma-u.5   100502246   uncharacterized LOC100502246 
 tae-r.2   123159366   pre-mRNA-splicing factor SLU7 
 tae-r.2   123147479   pre-mRNA-splicing factor SLU7 
 tae-r.2   123169807   pre-mRNA-splicing factor SLU7 
 hvu-r.1   123407575   pre-mRNA-splicing factor SLU7 
 sbi-r.1   8074058   pre-mRNA-splicing factor SLU7 
 bdi-r.1   100821942   pre-mRNA-splicing factor SLU7 
 cre-r.1   CHLRE_03g194000v5   uncharacterized protein 

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Top 50 coexpressed genes to SMP1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SMP1 (ath-m.9 coexpression data)

CoexMap"842877"


athSMP1 | Entrez gene ID : 842877      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 2 1 2 1 2 2 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0008284 [list] [network] positive regulation of cell population proliferation  (27 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (195 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0030628 [list] [network] pre-mRNA 3'-splice site binding  (2 genes)  IEA  
GO:0003727 [list] [network] single-stranded RNA binding  (56 genes)  TAS  
Protein NP_564859.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  mito 1  (predict for NP_564859.2)
Subcellular
localization
TargetP
other 7  (predict for NP_564859.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SMP1
ath-u.5
for
SMP1
ath-r.7
for
SMP1
ath-e.2
for
SMP1
ath-m.4.bio
for
SMP1
ath-m.4.hor
for
SMP1
ath-m.4.lig
for
SMP1
ath-m.4.str
for
SMP1
ath-m.4.tis
for
SMP1
ath-u.5
for
SMP2
bra-r.6
for
103833762
bra-r.6
for
103836599
bra-r.6
for
103844304
bna-r.1
for
111208800
bna-r.1
for
106370952
bna-r.1
for
106453449
ghi-r.1
for
107914928
ghi-r.1
for
121214909
ghi-r.1
for
107936255
cit-r.1
for
102616591
gma-u.5
for
100797503
gma-u.5
for
100778457
vvi-u.5
for
100249416
ppo-u.5
for
7484720
ppo-u.5
for
7453862
mtr-u.5
for
25499261
sly-u.5
for
101260949
sly-u.5
for
101252328
sot-r.1
for
102599170
sot-r.1
for
102586065
nta-r.1
for
107824087
nta-r.1
for
107767977
osa-u.5
for
4344572
zma-u.5
for
103629005
zma-u.5
for
100502246
tae-r.2
for
123159366
tae-r.2
for
123147479
tae-r.2
for
123169807
hvu-r.1
for
123407575
sbi-r.1
for
8074058
bdi-r.1
for
100821942
cre-r.1
for
CHLRE_03g194000v5


Ortholog ID: 5817
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol SMP1 SMP2 LOC103833762 LOC103836599 LOC103844304 LOC111208800 LOC106370952 LOC106401134 LOC107914928 LOC121214909 LOC107936255 LOC102616591 LOC100797503 LOC100778457 LOC100249416 LOC7484720 LOC7453862 LOC25499261 LOC101260949 LOC101252328 LOC102599170 LOC102586065 LOC107824087 LOC107767977 LOC4344572 LOC103629005 LOC100502246 LOC123159366 LOC123147479 LOC123169807 LOC123407575 LOC8074058 LOC100821942 CHLRE_03g194000v5
Function* Pre-mRNA splicing Prp18-interacting factor Pre-mRNA splicing Prp18-interacting factor pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7-A pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7-like pre-mRNA-splicing factor SLU7-like pre-mRNA-splicing factor SLU7-like pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7-like pre-mRNA-splicing factor SLU7 uncharacterized LOC100502246 pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7 pre-mRNA-splicing factor SLU7 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 8
bra03040 Spliceosome 6
bra04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra04120 Ubiquitin mediated proteolysis 3
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03015 mRNA surveillance pathway 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03015 mRNA surveillance pathway 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03015 mRNA surveillance pathway 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03250 Viral life cycle - HIV-1 2
vvi03082 ATP-dependent chromatin remodeling 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03250 Viral life cycle - HIV-1 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma04141 Protein processing in endoplasmic reticulum 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
zma03040 Spliceosome 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03040 Spliceosome 3
tae03015 mRNA surveillance pathway 3
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu04120 Ubiquitin mediated proteolysis 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
cre04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842877 829866 103833762 103836599 103844304 111208800 106370952 106401134 107914928 121214909 107936255 102616591 100797503 100778457 100249416 7484720 7453862 25499261 101260949 101252328 102599170 102586065 107824087 107767977 4344572 103629005 100502246 123159366 123147479 123169807 123407575 8074058 100821942 5718713
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