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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RFC3   replication factor C subunit 3 
 ath-u.5   RFC3   replication factor C subunit 3 
 ath-r.7   RFC3   replication factor C subunit 3 
 ath-e.2   RFC3   replication factor C subunit 3 
 ath-m.4.bio   RFC3   replication factor C subunit 3 
 ath-m.4.hor   RFC3   replication factor C subunit 3 
 ath-m.4.lig   RFC3   replication factor C subunit 3 
 ath-m.4.str   RFC3   replication factor C subunit 3 
 ath-m.4.tis   RFC3   replication factor C subunit 3 
 bra-r.6   103853075   replication factor C subunit 5 
 bra-r.6   103830567   replication factor C subunit 5 
 bna-r.1   106353456   replication factor C subunit 5 
 bna-r.1   106353483   replication factor C subunit 5 
 bna-r.1   106396996   replication factor C subunit 5 
 ghi-r.1   121229511   replication factor C subunit 5 
 ghi-r.1   107940558   replication factor C subunit 5 
 cit-r.1   102612743   replication factor C subunit 3 
 gma-u.5   100805231   replication factor C subunit 3 
 gma-u.5   100782652   replication factor C subunit 3 
 vvi-u.5   100266082   replication factor C subunit 3 
 ppo-u.5   7466453   replication factor C subunit 3 
 mtr-u.5   11414029   replication factor C subunit 3 
 sly-u.5   101264020   replication factor C subunit 3 
 sot-r.1   102578520   replication factor C subunit 3 
 nta-r.1   107802759   replication factor C subunit 3 
 nta-r.1   107822500   replication factor C subunit 3-like 
 osa-u.5   4330895   replication factor C subunit 3-like 
 zma-u.5   100216703   replication factor C subunit 3 
 tae-r.2   123145624   replication factor C subunit 3 
 tae-r.2   123138373   replication factor C subunit 3 
 tae-r.2   123128495   replication factor C subunit 3 
 hvu-r.1   123401909   replication factor C subunit 3 
 sbi-r.1   8078394   replication factor C subunit 3 
 bdi-r.1   100821930   replication factor C subunit 3 
 cre-r.1   CHLRE_12g527300v5   uncharacterized protein 

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Top 50 coexpressed genes to RFC3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RFC3 (ath-m.9 coexpression data)

CoexMap"844083"


athRFC3 | Entrez gene ID : 844083      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03030 [list] [network] DNA replication (43 genes)
ath03410 [list] [network] Base excision repair (50 genes)
ath03420 [list] [network] Nucleotide excision repair (85 genes)
ath03430 [list] [network] Mismatch repair (32 genes)
GO BP
GO:0031348 [list] [network] negative regulation of defense response  (78 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_177871.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 4,  cyto 3,  chlo 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_177871.1)
Subcellular
localization
TargetP
other 9  (predict for NP_177871.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RFC3
ath-u.5
for
RFC3
ath-r.7
for
RFC3
ath-e.2
for
RFC3
ath-m.4.bio
for
RFC3
ath-m.4.hor
for
RFC3
ath-m.4.lig
for
RFC3
ath-m.4.str
for
RFC3
ath-m.4.tis
for
RFC3
bra-r.6
for
103853075
bra-r.6
for
103830567
bna-r.1
for
106353456
bna-r.1
for
106353483
bna-r.1
for
106396996
ghi-r.1
for
121229511
ghi-r.1
for
107940558
cit-r.1
for
102612743
gma-u.5
for
100805231
gma-u.5
for
100782652
vvi-u.5
for
100266082
ppo-u.5
for
7466453
mtr-u.5
for
11414029
sly-u.5
for
101264020
sot-r.1
for
102578520
nta-r.1
for
107802759
nta-r.1
for
107822500
osa-u.5
for
4330895
zma-u.5
for
100216703
tae-r.2
for
123145624
tae-r.2
for
123138373
tae-r.2
for
123128495
hvu-r.1
for
123401909
sbi-r.1
for
8078394
bdi-r.1
for
100821930
cre-r.1
for
CHLRE_12g527300v5


Ortholog ID: 8776
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol RFC3 LOC103853075 LOC103830567 LOC106353456 LOC106353483 LOC106396996 LOC121229511 LOC107940558 LOC102612743 LOC100805231 LOC100782652 LOC100266082 LOC7466453 LOC11414029 LOC101264020 LOC102578520 LOC107802759 LOC107822500 LOC4330895 LOC100216703 LOC123145624 LOC123138373 LOC123054412 LOC123401909 LOC8078394 LOC100821930 CHLRE_12g527300v5
Function* replication factor C subunit 3 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3-like replication factor C subunit 3-like replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03410 Base excision repair 7
ath03420 Nucleotide excision repair 5
ath03430 Mismatch repair 5
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 4
bna03410 Base excision repair 4
bna03420 Nucleotide excision repair 4
bna03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 4
bna03410 Base excision repair 4
bna03420 Nucleotide excision repair 4
bna03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 4
bna03410 Base excision repair 4
bna03420 Nucleotide excision repair 4
bna03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
gma03430 Mismatch repair 3
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma03420 Nucleotide excision repair 5
gma03430 Mismatch repair 5
gma03410 Base excision repair 4
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 4
vvi03420 Nucleotide excision repair 4
vvi03430 Mismatch repair 4
vvi03410 Base excision repair 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
sly03030 DNA replication 3
sly03410 Base excision repair 3
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 6
nta03030 DNA replication 4
nta03430 Mismatch repair 4
nta03440 Homologous recombination 3
nta03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 6
nta03030 DNA replication 4
nta03430 Mismatch repair 4
nta03440 Homologous recombination 4
nta03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 3
osa03410 Base excision repair 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 7
zma03420 Nucleotide excision repair 6
zma03430 Mismatch repair 5
zma03410 Base excision repair 4
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 4
tae03030 DNA replication 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
tae03083 Polycomb repressive complex 4
tae03410 Base excision repair 4
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu03018 RNA degradation 2
hvu03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 3
sbi03410 Base excision repair 3
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 5
bdi03410 Base excision repair 4
bdi03420 Nucleotide excision repair 4
bdi03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 9
cre03410 Base excision repair 6
cre03420 Nucleotide excision repair 6
cre03430 Mismatch repair 6
cre03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844083 103853075 103830567 106353456 106353483 106396996 121229511 107940558 102612743 100805231 100782652 100266082 7466453 11414029 101264020 102578520 107802759 107822500 4330895 100216703 123145624 123138373 123054412 123401909 8078394 100821930 5722466
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