Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT1G79090   topoisomerase II-associated protein 
 ath-u.5   AT1G79090   topoisomerase II-associated protein 
 ath-r.7   AT1G79090   topoisomerase II-associated protein 
 ath-e.2   AT1G79090   topoisomerase II-associated protein 
 ath-m.4.bio   AT1G79090   topoisomerase II-associated protein 
 ath-m.4.hor   AT1G79090   topoisomerase II-associated protein 
 ath-m.4.lig   AT1G79090   topoisomerase II-associated protein 
 ath-m.4.str   AT1G79090   topoisomerase II-associated protein 
 ath-m.4.tis   AT1G79090   topoisomerase II-associated protein 
 ath-u.5   AT3G22270   Topoisomerase II-associated protein PAT1 
 ath-u.5   AT4G14990   Topoisomerase II-associated protein PAT1 
 bra-r.6   103832387   protein PAT1 homolog 
 bra-r.6   103830497   protein PAT1 homolog 
 bra-r.6   103871463   protein PAT1 homolog 2 
 bna-r.1   106453826   protein PAT1 homolog 1-like 
 bna-r.1   106372716   protein PAT1 homolog 2 
 bna-r.1   106369215   protein PAT1 homolog 2-like 
 ghi-r.1   107912935   protein PAT1 homolog 
 ghi-r.1   107919862   protein PAT1 homolog 1 
 ghi-r.1   107912671   protein PAT1 homolog 1 
 cit-r.1   102618153   protein PAT1 homolog 1-like 
 cit-r.1   102611484   protein PAT1 homolog 
 gma-u.5   100779096   protein PAT1 homolog 
 gma-u.5   100787112   protein PAT1 homolog 
 gma-u.5   100805313   protein PAT1 homolog 
 vvi-u.5   100255521   protein PAT1 homolog 2 
 vvi-u.5   100267869   protein PAT1 homolog 
 ppo-u.5   7480371   protein PAT1 homolog 
 ppo-u.5   7454988   protein PAT1 homolog 
 ppo-u.5   7495641   protein PAT1 homolog 1 
 mtr-u.5   25487016   protein PAT1 homolog 
 mtr-u.5   120577294   protein PAT1 homolog 1 
 mtr-u.5   25487017   protein PAT1 homolog 
 sly-u.5   101253667   protein PAT1 homolog 
 sly-u.5   101257075   protein PAT1 homolog 1-like 
 sly-u.5   101260608   protein PAT1 homolog 2 
 sot-r.1   102594467   uncharacterized LOC102594467 
 sot-r.1   102596910   protein PAT1 homolog 1 
 sot-r.1   102604826   uncharacterized LOC102604826 
 nta-r.1   107764136   protein PAT1 homolog 1 
 nta-r.1   107780052   protein PAT1 homolog 
 nta-r.1   107781173   protein PAT1 homolog 1 
 osa-u.5   4329076   protein PAT1 homolog 
 osa-u.5   4329480   protein PAT1 homolog 1 
 osa-u.5   9270665   protein PAT1 homolog 
 zma-u.5   100279503   Topoisomerase II-associated protein PAT1 
 zma-u.5   100383823   Topoisomerase II-associated protein PAT1 
 zma-u.5   109942640   protein PAT1 homolog 1-like 
 tae-r.2   123079296   protein PAT1 homolog 1 
 tae-r.2   123062178   protein PAT1 homolog 1 
 tae-r.2   123122381   protein PAT1 homolog 
 hvu-r.1   123444512   protein PAT1 homolog 1-like 
 hvu-r.1   123400158   protein PAT1 homolog 
 hvu-r.1   123447445   protein PAT1 homolog 1-like 
 sbi-r.1   8072123   uncharacterized LOC8072123 
 sbi-r.1   8077763   protein PAT1 homolog 1 
 sbi-r.1   8081372   protein PAT1 homolog 1 
 bdi-r.1   100832909   protein PAT1 homolog 
 bdi-r.1   100838182   protein PAT1 homolog 1 
 bdi-r.1   100841028   protein PAT1 homolog 1 
 cre-r.1   CHLRE_06g278203v5   uncharacterized protein 

close


Top 50 coexpressed genes to AT1G79090 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AT1G79090 (ath-m.9 coexpression data)

CoexMap"844250"


athAT1G79090 | Entrez gene ID : 844250      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 2 3 3 3 3 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03018 [list] [network] RNA degradation (114 genes)
GO BP
GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA  (1 genes)  IMP  
GO:0045087 [list] [network] innate immune response  (157 genes)  IMP  
GO CC
GO:0000932 [list] [network] P-body  (34 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001320315.1 [sequence] [blastp]
NP_565199.1 [sequence] [blastp]
NP_849904.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for NP_001320315.1)
nucl 8,  cyto 1  (predict for NP_565199.1)
nucl 8,  cyto 1  (predict for NP_849904.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001320315.1)
other 8  (predict for NP_565199.1)
other 8  (predict for NP_849904.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT1G79090
ath-u.5
for
AT1G79090
ath-r.7
for
AT1G79090
ath-e.2
for
AT1G79090
ath-m.4.bio
for
AT1G79090
ath-m.4.hor
for
AT1G79090
ath-m.4.lig
for
AT1G79090
ath-m.4.str
for
AT1G79090
ath-m.4.tis
for
AT1G79090
ath-u.5
for
AT3G22270
ath-u.5
for
AT4G14990
bra-r.6
for
103832387
bra-r.6
for
103830497
bra-r.6
for
103871463
bna-r.1
for
106453826
bna-r.1
for
106372716
bna-r.1
for
106369215
ghi-r.1
for
107912935
ghi-r.1
for
107919862
ghi-r.1
for
107912671
cit-r.1
for
102618153
cit-r.1
for
102611484
gma-u.5
for
100779096
gma-u.5
for
100787112
gma-u.5
for
100805313
vvi-u.5
for
100255521
vvi-u.5
for
100267869
ppo-u.5
for
7480371
ppo-u.5
for
7454988
ppo-u.5
for
7495641
mtr-u.5
for
25487016
mtr-u.5
for
120577294
mtr-u.5
for
25487017
sly-u.5
for
101253667
sly-u.5
for
101257075
sly-u.5
for
101260608
sot-r.1
for
102594467
sot-r.1
for
102596910
sot-r.1
for
102604826
nta-r.1
for
107764136
nta-r.1
for
107780052
nta-r.1
for
107781173
osa-u.5
for
4329076
osa-u.5
for
4329480
osa-u.5
for
9270665
zma-u.5
for
100279503
zma-u.5
for
100383823
zma-u.5
for
109942640
tae-r.2
for
123079296
tae-r.2
for
123062178
tae-r.2
for
123122381
hvu-r.1
for
123444512
hvu-r.1
for
123400158
hvu-r.1
for
123447445
sbi-r.1
for
8072123
sbi-r.1
for
8077763
sbi-r.1
for
8081372
bdi-r.1
for
100832909
bdi-r.1
for
100838182
bdi-r.1
for
100841028
cre-r.1
for
CHLRE_06g278203v5


Ortholog ID: 921
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol AT1G79090 AT3G22270 AT4G14990 LOC103832387 LOC103869095 LOC103834665 LOC106353417 LOC106346757 LOC125602342 LOC107928350 LOC107948554 LOC107909163 LOC102618153 LOC102611484 LOC100779096 LOC100787112 LOC100812450 LOC100255521 LOC100267869 LOC7480371 LOC7454988 LOC18106064 LOC25487016 LOC120577294 LOC25487017 LOC101253667 LOC101257075 LOC101260608 LOC102596910 LOC102604826 LOC102578809 LOC107781173 LOC107796298 LOC107794986 LOC4329076 LOC4329480 LOC9270665 LOC100383823 LOC109942640 LOC100272651 LOC123079296 LOC123104606 LOC123139643 LOC123444512 LOC123400158 LOC123447445 LOC8072123 LOC8077763 LOC8067493 LOC100838182 LOC100841028 LOC100835878 CHLRE_06g278203v5
Function* topoisomerase II-associated protein Topoisomerase II-associated protein PAT1 Topoisomerase II-associated protein PAT1 protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog 1-like protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1-like protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog 2 protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog 1-like protein PAT1 homolog 2 protein PAT1 homolog 1 uncharacterized LOC102604826 uncharacterized LOC102578809 protein PAT1 homolog 1 protein PAT1 homolog 2-like protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog Topoisomerase II-associated protein PAT1 protein PAT1 homolog 1-like uncharacterized LOC100272651 protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog 1-like protein PAT1 homolog protein PAT1 homolog 1-like uncharacterized LOC8072123 protein PAT1 homolog 1 uncharacterized LOC8067493 protein PAT1 homolog 1 protein PAT1 homolog 1 protein PAT1 homolog uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03013 Nucleocytoplasmic transport 3
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03015 mRNA surveillance pathway 3
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 3
gma04148 Efferocytosis 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 4
gma03082 ATP-dependent chromatin remodeling 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo03015 mRNA surveillance pathway 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 4
nta04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 4
nta04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 3
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
osa03013 Nucleocytoplasmic transport 3
osa03018 RNA degradation 2
osa04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 3
tae03082 ATP-dependent chromatin remodeling 3
tae03018 RNA degradation 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 5
hvu03013 Nucleocytoplasmic transport 4
hvu04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00541 Biosynthesis of various nucleotide sugars 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844250 821797 827158 103832387 103869095 103834665 106353417 106346757 125602342 107928350 107948554 107909163 102618153 102611484 100779096 100787112 100812450 100255521 100267869 7480371 7454988 18106064 25487016 120577294 25487017 101253667 101257075 101260608 102596910 102604826 102578809 107781173 107796298 107794986 4329076 4329480 9270665 100383823 109942640 100272651 123079296 123104606 123139643 123444512 123400158 123447445 8072123 8077763 8067493 100838182 100841028 100835878 5723634
The preparation time of this page was 0.1 [sec].