ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-r.6	4332957	RNA-binding protein CP29B, chloroplastic
osa-u.5	4332957	RNA-binding protein CP29B, chloroplastic
osa-m.8	4332957	RNA-binding protein CP29B, chloroplastic
osa-e.1	4332957	RNA-binding protein CP29B, chloroplastic
osa-u.5	4344001	29 kDa ribonucleoprotein A, chloroplastic
tae-r.2	123051986	29 kDa ribonucleoprotein A, chloroplastic
tae-r.2	123085968	RNA-binding protein CP29B, chloroplastic
tae-r.2	123187853	29 kDa ribonucleoprotein A, chloroplastic
hvu-r.1	123448659	RNA-binding protein CP29B, chloroplastic-like
hvu-r.1	123425182	29 kDa ribonucleoprotein A, chloroplastic-like
bdi-r.1	100832013	RNA-binding protein CP29B, chloroplastic
bdi-r.1	100826795	RNA-binding protein CP29B, chloroplastic
zma-u.5	100274547	uncharacterized LOC100274547
zma-u.5	100282223	uncharacterized LOC100282223
zma-u.5	100285364	uncharacterized LOC100285364
sbi-r.1	8080763	RNA-binding protein CP29B, chloroplastic
sbi-r.1	8079368	RNA-binding protein CP29B, chloroplastic
ath-u.5	AT2G37220	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	CP29	chloroplast RNA-binding protein 29
gma-u.5	100786275	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100812934	ribonucleoprotein At2g37220, chloroplastic-like
sly-u.5	101245790	29 kDa ribonucleoprotein A, chloroplastic
sly-u.5	101255645	29 kDa ribonucleoprotein B, chloroplastic
bra-r.6	103841271	29 kDa ribonucleoprotein, chloroplastic
bra-r.6	103857667	RNA-binding protein CP29B, chloroplastic
bra-r.6	103865583	RNA-binding protein CP29B, chloroplastic
vvi-u.5	100246501	29 kDa ribonucleoprotein A, chloroplastic
ppo-u.5	7486483	RNA-binding protein CP29B, chloroplastic
ppo-u.5	18100185	RNA-binding protein CP29B, chloroplastic
mtr-u.5	11433272	29 kDa ribonucleoprotein A, chloroplastic
ghi-r.1	107948368	29 kDa ribonucleoprotein A, chloroplastic
ghi-r.1	107899636	29 kDa ribonucleoprotein A, chloroplastic
ghi-r.1	107891135	29 kDa ribonucleoprotein A, chloroplastic
bna-r.1	106352831	29 kDa ribonucleoprotein, chloroplastic-like
bna-r.1	106452455	29 kDa ribonucleoprotein, chloroplastic
bna-r.1	106441071	RNA-binding protein CP29B, chloroplastic
sot-r.1	102577524	single-stranded DNA binding protein precursor
sot-r.1	102585227	29 kDa ribonucleoprotein B, chloroplastic-like
cit-r.1	102621789	RNA-binding protein CP29B, chloroplastic
nta-r.1	107824003	29 kDa ribonucleoprotein A, chloroplastic
nta-r.1	107814688	31 kDa ribonucleoprotein, chloroplastic
nta-r.1	107792669	29 kDa ribonucleoprotein B, chloroplastic

Top 50 coexpressed genes to 4332957 (osa-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4332957 (osa-r.6 coexpression data)

CoexMap"4332957"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:1901259 [list] [network] chloroplast rRNA processing

(18 genes)

IEA

GO CC

GO:0009535 [list] [network] chloroplast thylakoid membrane

(102 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(333 genes)

IEA

Protein

XP_015628461.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9

(predict for XP_015628461.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_015628461.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-r.6 for 4332957	osa-u.5 for 4332957	osa-m.8 for 4332957	osa-e.1 for 4332957	osa-u.5 for 4344001	tae-r.2 for 123051986	tae-r.2 for 123085968	tae-r.2 for 123187853	hvu-r.1 for 123448659	hvu-r.1 for 123425182	bdi-r.1 for 100832013	bdi-r.1 for 100826795	zma-u.5 for 100274547	zma-u.5 for 100282223	zma-u.5 for 100285364	sbi-r.1 for 8080763	sbi-r.1 for 8079368	ath-u.5 for AT2G37220	ath-u.5 for CP29	gma-u.5 for 100786275	gma-u.5 for 100812934	sly-u.5 for 101245790	sly-u.5 for 101255645	bra-r.6 for 103841271	bra-r.6 for 103857667	bra-r.6 for 103865583	vvi-u.5 for 100246501	ppo-u.5 for 7486483	ppo-u.5 for 18100185	mtr-u.5 for 11433272	ghi-r.1 for 107948368	ghi-r.1 for 107899636	ghi-r.1 for 107891135	bna-r.1 for 106352831	bna-r.1 for 106452455	bna-r.1 for 106441071	sot-r.1 for 102577524	sot-r.1 for 102585227	cit-r.1 for 102621789	nta-r.1 for 107824003	nta-r.1 for 107814688	nta-r.1 for 107792669

Ortholog

Ortholog ID: 3319

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

CP29

Function^*

RNA-binding protein CP29B, chloroplastic

29 kDa ribonucleoprotein A, chloroplastic

RNA-binding protein CP29B, chloroplastic

29 kDa ribonucleoprotein A, chloroplastic

RNA-binding protein CP29B, chloroplastic-like

29 kDa ribonucleoprotein A, chloroplastic-like

RNA-binding protein CP29B, chloroplastic

uncharacterized LOC100274547

uncharacterized LOC100282223

uncharacterized LOC100285364

RNA-binding protein CP29B, chloroplastic

RNA-binding (RRM/RBD/RNP motifs) family protein

chloroplast RNA-binding protein 29

RNA-binding (RRM/RBD/RNP motifs) family protein

ribonucleoprotein At2g37220, chloroplastic-like

29 kDa ribonucleoprotein A, chloroplastic

29 kDa ribonucleoprotein B, chloroplastic

RNA-binding protein CP29B, chloroplastic

29 kDa ribonucleoprotein A, chloroplastic

RNA-binding protein CP29B, chloroplastic

29 kDa ribonucleoprotein A, chloroplastic

RNA-binding protein CP29B, chloroplastic

29 kDa ribonucleoprotein, chloroplastic

RNA-binding protein CP29B, chloroplastic

single-stranded DNA binding protein precursor

29 kDa ribonucleoprotein B, chloroplastic-like

RNA-binding protein CP29B, chloroplastic

31 kDa ribonucleoprotein, chloroplastic

29 kDa ribonucleoprotein B, chloroplastic

29 kDa ribonucleoprotein A, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00860	Porphyrin metabolism	3
hvu03018	RNA degradation	2
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	3
bdi00860	Porphyrin metabolism	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	2
zma03060	Protein export	2
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	3
vvi03010	Ribosome	2
vvi00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00340	Histidine metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00340	Histidine metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00020	Citrate cycle (TCA cycle)	2
sot00270	Cysteine and methionine metabolism	2
sot00566	Sulfoquinovose metabolism	2
sot00620	Pyruvate metabolism	2
sot00630	Glyoxylate and dicarboxylate metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

4332957

4344001

123187853

123092005

123044103

123448659

123425182

100832013

100826795

100274547

100282223

100285364

8080763

8079368

818299

824514

100786275

100812934

101245790

101255645

103857667

103865583

103867216

100246501

7486483

18100185

11433272

107948368

107891135

107889598

106441071

106366108

106392732

102577524

102585227

102621789

107814688

107792669

107815238

The preparation time of this page was 0.1 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	2	2	3	2	2	2	2	3	1	2	1	3	3	2	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4332957 (osa-r.6 coexpression data)

Top 50 enrichment test to 4332957 (osa-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**