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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102577524   single-stranded DNA binding protein precursor 
 sly-u.5   101245790   29 kDa ribonucleoprotein A, chloroplastic 
 sly-u.5   101255645   29 kDa ribonucleoprotein B, chloroplastic 
 ath-u.5   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   CP29   chloroplast RNA-binding protein 29 
 gma-u.5   100812934   ribonucleoprotein At2g37220, chloroplastic-like 
 gma-u.5   100786275   RNA-binding (RRM/RBD/RNP motifs) family protein 
 vvi-u.5   100246501   29 kDa ribonucleoprotein A, chloroplastic 
 ppo-u.5   7486483   RNA-binding protein CP29B, chloroplastic 
 ppo-u.5   18100185   RNA-binding protein CP29B, chloroplastic 
 mtr-u.5   11433272   29 kDa ribonucleoprotein A, chloroplastic 
 osa-u.5   4332957   RNA-binding protein CP29B, chloroplastic 
 osa-u.5   4344001   29 kDa ribonucleoprotein A, chloroplastic 
 zma-u.5   100285364   uncharacterized LOC100285364 
 zma-u.5   100282223   uncharacterized LOC100282223 
 zma-u.5   100274547   uncharacterized LOC100274547 

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Top 50 coexpressed genes to 102577524 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102577524 (sot-r.1 coexpression data)

CoexMap"102577524"


sotLOC102577524 | Entrez gene ID : 102577524      
Species sot sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre
Paralog 1 2 2 2 1 2 1 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (13 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (97 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (296 genes)  IEA  
Protein NP_001275094.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_001275094.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001275094.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102577524
sly-u.5
for
101245790
sly-u.5
for
101255645
ath-u.5
for
AT2G37220
ath-u.5
for
CP29
gma-u.5
for
100812934
gma-u.5
for
100786275
vvi-u.5
for
100246501
ppo-u.5
for
7486483
ppo-u.5
for
18100185
mtr-u.5
for
11433272
osa-u.5
for
4332957
osa-u.5
for
4344001
zma-u.5
for
100285364
zma-u.5
for
100282223
zma-u.5
for
100274547


Ortholog ID: 3319
Species sot sot sly sly nta nta ath ath gma gma bra bra vvi ppo ppo mtr ghi ghi bna bna cit osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC102577524 LOC102585227 LOC101245790 LOC101255645 LOC107792669 LOC107814688 AT2G37220 CP29 LOC100786275 LOC100812934 LOC103857667 LOC103867216 LOC100246501 LOC7486483 LOC18100185 LOC11433272 LOC107948368 LOC107889598 LOC106441071 LOC106366108 LOC102621789 LOC4332957 LOC4344001 LOC100282223 LOC100274547 LOC123044103 LOC123092005 LOC123448659 LOC123425182 LOC8079368 LOC8080763 LOC100832013 LOC100826795
Function* single-stranded DNA binding protein precursor 29 kDa ribonucleoprotein B, chloroplastic-like 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein B, chloroplastic 29 kDa ribonucleoprotein B, chloroplastic 31 kDa ribonucleoprotein, chloroplastic RNA-binding (RRM/RBD/RNP motifs) family protein chloroplast RNA-binding protein 29 RNA-binding (RRM/RBD/RNP motifs) family protein ribonucleoprotein At2g37220, chloroplastic-like RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic uncharacterized LOC100282223 uncharacterized LOC100274547 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic-like 29 kDa ribonucleoprotein A, chloroplastic-like RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00020 Citrate cycle (TCA cycle) 2
sot00270 Cysteine and methionine metabolism 2
sot00566 Sulfoquinovose metabolism 2
sot00620 Pyruvate metabolism 2
sot00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 3
vvi03010 Ribosome 2
vvi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
zma03060 Protein export 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03018 RNA degradation 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102577524 102585227 101245790 101255645 107792669 107814688 818299 824514 100786275 100812934 103857667 103867216 100246501 7486483 18100185 11433272 107948368 107889598 106441071 106366108 102621789 4332957 4344001 100282223 100274547 123044103 123092005 123448659 123425182 8079368 8080763 100832013 100826795
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