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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7468138   truncated transcription factor CAULIFLOWER A 
 ppo-u.5   7468138   truncated transcription factor CAULIFLOWER A 
 ppo-r.4   7468138   truncated transcription factor CAULIFLOWER A 
 ppo-u.5   7484716   truncated transcription factor CAULIFLOWER A 
 gma-u.5   100805348   truncated transcription factor CAULIFLOWER A 
 gma-u.5   AP1   MADS-box transcription factor 
 gma-u.5   FULC   MADS-box protein FULc 
 mtr-u.5   25488419   truncated transcription factor CAULIFLOWER A 
 ath-u.5   AP1   K-box region and MADS-box transcription factor family protein 
 ath-u.5   AGL8   AGAMOUS-like 8 
 bra-r.6   103860551   agamous-like MADS-box protein AGL8 homolog 
 vvi-u.5   100257072   truncated transcription factor CAULIFLOWER A 
 vvi-u.5   VFUL-L   FUL-like protein 
 vvi-u.5   AP1   apetala1 
 ghi-r.1   107893801   truncated transcription factor CAULIFLOWER A-like 
 cit-r.1   102615519   truncated transcription factor CAULIFLOWER A 
 cit-r.1   AP1   APETALA1 
 cit-r.1   102612359   truncated transcription factor CAULIFLOWER A 
 sly-u.5   FUL2   transcription factor FRUITFULL 
 sot-r.1   FUL2   agamous-like MADS-box protein AGL8 homolog 
 sot-r.1   FUL1   Agamous-like MADS-box protein AGL8 homolog 
 nta-r.1   107815093   agamous-like MADS-box protein AGL8 homolog 
 osa-u.5   4342214   MADS-box transcription factor 15-like 
 osa-u.5   4334140   MADS-box transcription factor 14-like 
 zma-u.5   542032   m15 protein 
 zma-u.5   542041   m4 protein 
 zma-u.5   542257   zea apetala homolog 1 
 tae-r.2   543351   mads11 protein 
 tae-r.2   780641   MADS-box transcription factor 15 
 tae-r.2   543103   MADS-box transcription factor 14 
 hvu-r.1   123452274   MADS-box transcription factor 14-like 
 sbi-r.1   8085925   MADS-box transcription factor 14 
 sbi-r.1   8054531   MADS-box transcription factor 15 
 bdi-r.1   100845222   MADS-box transcription factor 15-like 
 bdi-r.1   100842079   MADS-box transcription factor 14-like 

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Top 50 coexpressed genes to 7468138 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7468138 (ppo-m.4 coexpression data)

CoexMap"7468138"


ppoLOC7468138 | Entrez gene ID : 7468138    
Species ppo gma mtr ath bra vvi ghi cit sly sot nta osa zma tae hvu sbi bdi bna cre
Paralog 4 3 1 2 1 3 1 3 1 2 1 2 3 3 1 2 2 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (159 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (266 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (338 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (520 genes)  IEA  
Protein XP_002316076.1 [sequence] [blastp]
XP_024466010.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_002316076.1)
nucl 9  (predict for XP_024466010.1)
Subcellular
localization
TargetP
mito 7,  other 4  (predict for XP_002316076.1)
mito 7,  other 4  (predict for XP_024466010.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7468138
ppo-u.5
for
7468138
ppo-r.4
for
7468138
ppo-u.5
for
7484716
gma-u.5
for
100805348
gma-u.5
for
AP1
gma-u.5
for
FULC
mtr-u.5
for
25488419
ath-u.5
for
AP1
ath-u.5
for
AGL8
bra-r.6
for
103860551
vvi-u.5
for
100257072
vvi-u.5
for
VFUL-L
vvi-u.5
for
AP1
ghi-r.1
for
107893801
cit-r.1
for
102615519
cit-r.1
for
AP1
cit-r.1
for
102612359
sly-u.5
for
FUL2
sot-r.1
for
FUL2
sot-r.1
for
FUL1
nta-r.1
for
107815093
osa-u.5
for
4342214
osa-u.5
for
4334140
zma-u.5
for
542032
zma-u.5
for
542041
zma-u.5
for
542257
tae-r.2
for
543351
tae-r.2
for
780641
tae-r.2
for
543103
hvu-r.1
for
123452274
sbi-r.1
for
8085925
sbi-r.1
for
8054531
bdi-r.1
for
100845222
bdi-r.1
for
100842079


Ortholog ID: 1094
Species ppo ppo gma mtr ath ath bra vvi vvi vvi ghi bna bna cit cit cit sly sly sot sot nta osa osa zma zma zma tae tae tae hvu sbi sbi bdi bdi
Symbol LOC7468138 LOC7484716 LOC100784742 LOC25488419 AP1 AGL8 LOC103860551 LOC100257072 VFUL-L AP1 LOC107893801 LOC106428477 LOC106439964 LOC102615519 AP1 LOC102612359 FUL2 FUL1 FUL2 FUL1 FUL1 LOC4342214 LOC4334140 LOC542032 LOC542257 LOC541765 LOC543351 LOC780641 LOC543103 LOC123452274 LOC8085925 LOC8054531 LOC100845222 LOC100842079
Function* truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A K-box region and MADS-box transcription factor family protein AGAMOUS-like 8 agamous-like MADS-box protein AGL8 homolog truncated transcription factor CAULIFLOWER A FUL-like protein apetala1 truncated transcription factor CAULIFLOWER A-like floral homeotic protein APETALA 1 agamous-like MADS-box protein AGL8 homolog truncated transcription factor CAULIFLOWER A APETALA1 truncated transcription factor CAULIFLOWER A transcription factor FRUITFULL agamous-like MADS-box protein AGL8 homolog agamous-like MADS-box protein AGL8 homolog Agamous-like MADS-box protein AGL8 homolog agamous-like MADS-box protein AGL8 homolog MADS-box transcription factor 15-like MADS-box transcription factor 14-like m15 protein zea apetala homolog 1 MADS3 mads11 protein MADS-box transcription factor 15 MADS-box transcription factor 14 MADS-box transcription factor 14-like MADS-box transcription factor 14 MADS-box transcription factor 15 MADS-box transcription factor 15-like MADS-box transcription factor 14-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 2
sot00350 Tyrosine metabolism 2
sot00360 Phenylalanine metabolism 2
sot00410 beta-Alanine metabolism 2
sot00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7468138 7484716 100784742 25488419 843244 836212 103860551 100257072 100232953 100232952 107893801 106428477 106439964 102615519 102578018 102612359 543887 543839 102583048 102577795 107774027 4342214 4334140 542032 542257 541765 543351 780641 543103 123452274 8085925 8054531 100845222 100842079
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