ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	543103	MADS-box transcription factor 14
osa-u.5	4334140	MADS-box transcription factor 14-like
osa-u.5	4342214	MADS-box transcription factor 15-like
zma-u.5	542257	zea apetala homolog 1
zma-u.5	542041	m4 protein
zma-u.5	542032	m15 protein
ath-u.5	AP1	K-box region and MADS-box transcription factor family protein
ath-u.5	AGL8	AGAMOUS-like 8
gma-u.5	100805348	truncated transcription factor CAULIFLOWER A
gma-u.5	AP1	MADS-box transcription factor
gma-u.5	FULC	MADS-box protein FULc
sly-u.5	FUL2	transcription factor FRUITFULL
sly-u.5	FUL1	agamous-like MADS-box protein AGL8 homolog
vvi-u.5	100257072	truncated transcription factor CAULIFLOWER A
vvi-u.5	VFUL-L	FUL-like protein
vvi-u.5	AP1	apetala1
ppo-u.5	7468138	truncated transcription factor CAULIFLOWER A
mtr-u.5	25488419	truncated transcription factor CAULIFLOWER A

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(367 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(8281 genes)

IEA

GO MF

GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding	(700 genes)	IEA
GO:0046983 [list] [network] protein dimerization activity	(2051 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(3484 genes)	IEA

Protein

XP_044390500.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_044390500.1)

Subcellular
localization
TargetP

other 5, mito 5

(predict for XP_044390500.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 543103	osa-u.5 for 4334140	osa-u.5 for 4342214	zma-u.5 for 542257	zma-u.5 for 542041	zma-u.5 for 542032	ath-u.5 for AP1	ath-u.5 for AGL8	gma-u.5 for 100805348	gma-u.5 for AP1	gma-u.5 for FULC	sly-u.5 for FUL2	sly-u.5 for FUL1	vvi-u.5 for 100257072	vvi-u.5 for VFUL-L	vvi-u.5 for AP1	ppo-u.5 for 7468138	mtr-u.5 for 25488419

Ortholog

Ortholog ID: 1094

Species

tae

bdi

osa

zma

sbi

ath

sly

vvi

ppo

mtr

bna

sot

cit

Symbol

AGL8

FUL1

AP1

FUL2

FUL1

AP1

LOC102612359

Function^*

MADS-box transcription factor 15

mads11 protein

MADS-box transcription factor 14-like

MADS-box transcription factor 15-like

MADS-box transcription factor 14-like

MADS-box transcription factor 15-like

zea apetala homolog 1

MADS3

MADS-box transcription factor 15

MADS-box transcription factor 14

AGAMOUS-like 8

agamous-like MADS-box protein AGL8 homolog

truncated transcription factor CAULIFLOWER A

apetala1

truncated transcription factor CAULIFLOWER A

agamous-like MADS-box protein AGL8 homolog

Agamous-like MADS-box protein AGL8 homolog

APETALA1

truncated transcription factor CAULIFLOWER A

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00260	Glycine, serine and threonine metabolism	2
sot00350	Tyrosine metabolism	2
sot00360	Phenylalanine metabolism	2
sot00410	beta-Alanine metabolism	2
sot00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	3

Expression

Expression pattern

Entrez Gene ID^*

780641

543351

100842079

100845222

4334140

4342214

542257

541765

8054531

8085925

836212

543839

100257072

100232952

7484716

7468138

25488419

106439964

102583048

102577795

102578018

102612359

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 543103 (tae-r.2 coexpression data)

Top 50 enrichment test to 543103 (tae-r.2 coexpression data)


Species	tae	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre
Paralog	1	2	3	2	3	2	3	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 543103 (tae-r.2 coexpression data)

Top 50 enrichment test to 543103 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**